Locus 1461

Sequence ID 2R_DroMel_CAF1
Location 5,579,420 – 5,579,540
Length 120
Max. P 0.634543
window2492

overview

Window 2

Location 5,579,420 – 5,579,540
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.94
Mean single sequence MFE -43.93
Consensus MFE -15.11
Energy contribution -16.48
Covariance contribution 1.36
Combinations/Pair 1.27
Mean z-score -2.32
Structure conservation index 0.34
SVM decision value 0.21
SVM RNA-class probability 0.634543
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5579420 120 + 20766785
ACAGCGGGCAGAUCGGCAAAGCCAGGCCAAAUGGACUCCGAUGGAGCUCCCAAGAGAUCGAUGAUCAUGUCCAGCUGUGCUAUCUCCGAAUUACCCGGCAGCAAAGGUUUUCCGAGCAGC
(((((((((((((((((........)))....(((((((...)))).)))............)))).))))).)))))(((..(((.(((..(((..........))).))).))).))) ( -38.00)
>DroVir_CAF1 620 120 + 1
ACAGCUGGCAAGUCCAGGAAACCCGGCCAAAUUGAUUCGGAGGGUGCACCAAGCAGAUCAAUAAUCAUGUCAAGCUGUGCAAUCUCCGAAUUGCCUGGGAGCAGCGGUUUGCCCAGCAAU
...(((((((((.((..(...((((((......(((((((((..(((((..(((.(((..........)))..))))))))..)))))))))))).)))..)...)))))).)))))... ( -45.50)
>DroGri_CAF1 683 120 + 1
AGGGCGGGCAAUUCGAGGUAGCCGGGCCAAAUGGAUUCUGAGGGGGCGCCAAACAGAUCGAUAAUCAUGUCGAGCUGCGCAAUCUCAGAAUUGCCCGGCAGCAGCGGUUUGCCCGUCAAC
..(((((((((..((..((.(((((((......((((((((((..((((.....((.((((((....)))))).))))))..))))))))))))))))).))..))..)))))))))... ( -65.80)
>DroWil_CAF1 384 120 + 1
AAAGCUGGCAGUUCUGUAAAUCCUGGCCAAAUGGAUUUUGAGGGCGCUCCCAGCAAUUCAAUUAUCAAGUCUAGUUGAGCAAUCUCAGAGUUGCCCGGCAGCAAAGGUUUACCGAUCAAC
...((((.(...((...((((((.........)))))).))((((((((..((...((((((((.......))))))))....))..))).)))))).))))...((....))....... ( -32.60)
>DroMoj_CAF1 405 120 + 1
ACGGCAGGCAAAUCUUUAUAGCCGGGCCAAAUCGAUUCCGAUGGAGCGCCAAGCAGGUCAAUAAUCAUGUCCAGCUGUGCAAUUUCCGAGGUGCCCGGCAGUAGCGGCUUUCCUAAUAAC
..((.((((......((((.((((((((...(((..(((...)))((((..(((.((.((.......)).)).)))))))......))).).))))))).))))..)))).))....... ( -38.40)
>DroAna_CAF1 370 120 + 1
ACGGCGGGCAGCUCCGAAAAGCCAGGCCAAAUGGUUUCCGAGGGAGCACCCAGCAAGUCAAUUAUCAUGUCCAGCUGGGCAAUCUCUGAGUUACCCGGCAGCAAGGGUUUCCCAAGCAGA
..(.((((.(((((((..((((((.......)))))).))(((((...((((((..(.((.......)).)..))))))...)))))))))).)))).).((..(((...)))..))... ( -43.30)
>consensus
ACAGCGGGCAAAUCCGGAAAGCCAGGCCAAAUGGAUUCCGAGGGAGCACCAAGCAGAUCAAUAAUCAUGUCCAGCUGUGCAAUCUCCGAAUUGCCCGGCAGCAACGGUUUGCCCAGCAAC
...((.(((...........)))..(((.....(((((.((((..((((..(((...................)))))))..)))).)))))....))).))...((....))....... (-15.11 = -16.48 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:25 2006