Locus 146

Sequence ID 2R_DroMel_CAF1
Location 1,407,350 – 1,407,462
Length 112
Max. P 0.607730
window331

overview

Window 1

Location 1,407,350 – 1,407,462
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.34
Mean single sequence MFE -40.94
Consensus MFE -21.38
Energy contribution -24.42
Covariance contribution 3.04
Combinations/Pair 1.09
Mean z-score -2.18
Structure conservation index 0.52
SVM decision value 0.15
SVM RNA-class probability 0.607730
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1407350 112 - 20766785
UGACCCAUUUUUGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAA------GACUCGAACGAAUUCUAUGUACCAG--UGGGGAGGGGGGAAGGGGGAGGCGGCAGAAACUGG
....((((((((((((.....(((((((((((((((......(((((..((.------...))..)))))((((((......)--))))).))))))))))))))).))))))))).))) ( -42.20)
>DroSec_CAF1 33135 119 - 1
UGACCCAUUUUCGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAAGACGAAGACUCGAACGAAUUCUAUGUACCACAAGG-GGCGGGGGGAAGGGGGAGGCGGCAGAAACUGG
....(((.((((.....(((((((((((((((((((((..((..((((.(...(((.(((.((....))..))).))).))))))).-.)))))))))))))))).))))).)))).))) ( -49.80)
>DroSim_CAF1 38153 116 - 1
UGACCCAUUUUCGCCG-GCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAAGACGAAGACUCGAACGAAUUCUAUGUACCACAAGGGGGCGGGGGGAAGAGGGAG---GCAGAAACUGG
....(((.((((....-((..(((((((((((((((((..((((.(((.(...(((.(((.((....))..))).))).))))))))..)))))))))))))))))---)).)))).))) ( -46.90)
>DroEre_CAF1 31618 105 - 1
UGACCCAUUUUCGCCUCGCUGCUCUCUUUUCUCUCCAUUUCUUUUGUG--------AAGACUGGAACGAAUUCUAUGUACC-G------ACGAGGGGCAGAGAGUGGCGGGAAAAACUGG
....(((.(((..((.(((..(((((((..(((((((..(((((...)--------)))).))))...........((...-.------)))))..).))))))..)))))..))).))) ( -35.90)
>DroYak_CAF1 33569 106 - 1
UGACCCAUUUUCGCUGGGCUGCUCUCUUUUCUCUCCAUUUCUUUUGUG--------AAGACACGAACGAAUUCUAUGUACCAG------AAAAGGGGAAGACAGAGGCGGGAAAAACUGG
...((((.......))))((((.((((.(..(((((..(((.((((((--------....)))))).)))((((.......))------))..)))))..).)))))))).......... ( -29.90)
>consensus
UGACCCAUUUUCGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAA____AAGACUCGAACGAAUUCUAUGUACCAG___G_GGCGGGGGGAAGAGGGAGGCGGCAGAAACUGG
....(((.((((.....(((((((((((((((((((.((((......))))............(((....)))..................))))))))))))))).)))).)))).))) (-21.38 = -24.42 +   3.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:06 2006