Locus 1456

Sequence ID 2R_DroMel_CAF1
Location 5,561,734 – 5,561,827
Length 93
Max. P 0.638619
window2486 window2487

overview

Window 6

Location 5,561,734 – 5,561,827
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -21.37
Consensus MFE -20.23
Energy contribution -19.57
Covariance contribution -0.66
Combinations/Pair 1.15
Mean z-score -1.43
Structure conservation index 0.95
SVM decision value 0.22
SVM RNA-class probability 0.638619
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5561734 93 + 20766785
AUUCGGUUUGCAUUUUAAUAUAAAUAUUCACUUUUCAGAUGUAGCGUUAUCUGCUGAGUUGGCCGGCAGGCCAUUACAGUGUGUUACAGCUUA
.....((.((((((.((((..........((((..((((((......))))))..)))).((((....)))))))).))))))..))...... ( -22.10)
>DroSec_CAF1 363 92 + 1
AUUUGGUUUGCAUUUUAAUA-AACUAUUCACUUUUCAGAUGUAGCUUUAUCUGCUAAGUUGGCCGGUAGGCCAUAACAGUGUGUUACAGCUUA
.........((....(((((-.(((....((((..((((((......))))))..))))(((((....)))))....))).)))))..))... ( -21.40)
>DroSim_CAF1 366 92 + 1
AUUUUCCUUGCAUUUUAAUA-AACUAUUCACUUUUCAGAUGUAGCGUCAUCUGCUGAGUUGGUCGUCAGGCCAUAACAGUGUGUUACAGCUUA
.........((....(((((-.(((....((((..((((((......))))))..))))(((((....)))))....))).)))))..))... ( -20.60)
>consensus
AUUUGGUUUGCAUUUUAAUA_AACUAUUCACUUUUCAGAUGUAGCGUUAUCUGCUGAGUUGGCCGGCAGGCCAUAACAGUGUGUUACAGCUUA
.........(((((...............((((..((((((......))))))..))))(((((....)))))....)))))........... (-20.23 = -19.57 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 5,561,734 – 5,561,827
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 90.65
Mean single sequence MFE -19.77
Consensus MFE -16.22
Energy contribution -16.67
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.06
Structure conservation index 0.82
SVM decision value 0.16
SVM RNA-class probability 0.612248
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5561734 93 - 20766785
UAAGCUGUAACACACUGUAAUGGCCUGCCGGCCAACUCAGCAGAUAACGCUACAUCUGAAAAGUGAAUAUUUAUAUUAAAAUGCAAACCGAAU
.....((((.(((.(((...(((((....)))))...)))(((((........)))))....)))((((....))))....))))........ ( -18.50)
>DroSec_CAF1 363 92 - 1
UAAGCUGUAACACACUGUUAUGGCCUACCGGCCAACUUAGCAGAUAAAGCUACAUCUGAAAAGUGAAUAGUU-UAUUAAAAUGCAAACCAAAU
((((((((............(((((....)))))((((..(((((........)))))..))))..))))))-)).................. ( -21.70)
>DroSim_CAF1 366 92 - 1
UAAGCUGUAACACACUGUUAUGGCCUGACGACCAACUCAGCAGAUGACGCUACAUCUGAAAAGUGAAUAGUU-UAUUAAAAUGCAAGGAAAAU
((((((((..(((.(((...(((........)))...)))((((((......))))))....))).))))))-)).................. ( -19.10)
>consensus
UAAGCUGUAACACACUGUUAUGGCCUGCCGGCCAACUCAGCAGAUAACGCUACAUCUGAAAAGUGAAUAGUU_UAUUAAAAUGCAAACCAAAU
..((((((..(((.(((...(((((....)))))...)))(((((........)))))....))).))))))..................... (-16.22 = -16.67 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006