Locus 1455

Sequence ID 2R_DroMel_CAF1
Location 5,560,422 – 5,560,525
Length 103
Max. P 0.680889
window2485

overview

Window 5

Location 5,560,422 – 5,560,525
Length 103
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 81.07
Mean single sequence MFE -38.75
Consensus MFE -24.55
Energy contribution -25.30
Covariance contribution 0.75
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.31
SVM RNA-class probability 0.680889
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5560422 103 + 20766785
ACGCAAUAGAGAUGAGCGCUCGGCGUGUUUGAUGGGGCCAGCGAUGGCCCUAGUUGCCGAUAGUUUUUGACAAGA--------UAACAGAGCGCUUAGU--GUCUGUUAAGCC
..((((((((.((((((((((((((.......((((((((....))))))))..))))....(((.((.....))--------.))).))))))))).)--.))))))..)). ( -41.70)
>DroSim_CAF1 11837 111 + 1
ACGCAAUAGAGAUGGGCGCUCGGCGUGUUCGGUGGGGCCAGCGAUGGCCCUAUUAGCCGAUAGUUUUUGACAAGAUACUCGGAUAACAGAGCGCAUAGU--GUCUGUUAAGCC
..((((((((.((..(((((((((......((((((((((....)))))))))).)))....((((((((........))))).))).))))))...))--.))))))..)). ( -43.60)
>DroEre_CAF1 11928 110 + 1
ACGCAAUAGAGAUGGGCGGUC---GUGUUCUGUGAGGCCAGCGAUGGCUCUGUCAGCCGAUACUUUUUGACAAUAUACUCCGAUACCAAGGCGCUGAGUGUGUCUGUUAAGUU
..........(((((((.(((---((...((....))...))))).)).)))))...........(((((((((((((((.(...(....)..).)))))))).))))))).. ( -28.50)
>DroYak_CAF1 14376 113 + 1
ACGCAAUAGAGAUGGGCGCUCGGUGUGUUCUGUGAGGCCAGCGAUGGCUCUGGUAACCGAUAGUUUUUGACAAGAUACUUGUGUACCAGAGCGCUAACUGUCUCUGUUAAGCC
..(((((((((((((.((((.(((.(........).)))))))...(((((((((..(((......)))(((((...))))).))))))))).....)))))))))))..)). ( -41.20)
>consensus
ACGCAAUAGAGAUGGGCGCUCGGCGUGUUCGGUGAGGCCAGCGAUGGCCCUAGUAGCCGAUAGUUUUUGACAAGAUACUCGGAUAACAGAGCGCUUAGU__GUCUGUUAAGCC
..((((((((..(((((((((...........((((((((....)))))))).....(((......)))...................))))))))).....))))))..)). (-24.55 = -25.30 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006