Locus 1454

Sequence ID 2R_DroMel_CAF1
Location 5,558,396 – 5,558,496
Length 100
Max. P 0.513197
window2484

overview

Window 4

Location 5,558,396 – 5,558,496
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -25.44
Consensus MFE -17.64
Energy contribution -18.44
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value -0.04
SVM RNA-class probability 0.513197
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5558396 100 - 20766785
GUGGAAUCGCCCCAUGUUUAAGGCACCU---ACAUAUCCAUAUAUUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUGCGAGGCCUUAAUGGCCAAAG
......((((....((((...(((((.(---((.((((((.........))))))))).......)))))....))))....))))((((.....)))).... ( -26.40)
>DroSec_CAF1 11294 100 - 1
GUGGGAUCGCCCCAUGCUUAAGGCACCU---ACAUAUCCAUAAAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUACGAGGCCUUAAUGGCCAAAG
(((((.....)))))(((((((((...(---((.((((((.........)))))))))...(((((((((....))).)))).))..))))))..)))..... ( -29.40)
>DroSim_CAF1 9787 103 - 1
GUGGGAUCGCCCCAUGUUUAAGGCACCUACUACAUAUCCAUAUAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGCGCGAGGCCUUAAUGGCCAAAG
(((((...(((..........))).)))))(((.((((((.........)))))))))...((...((((....))))...))...((((.....)))).... ( -28.20)
>DroEre_CAF1 9932 84 - 1
GUGGAAUCGC----------------AU---ACAUAUCCAUAUAGUACAUGGAUAGUAAAAAGAUGUGCUCAAUAGCAACGUGCGAGGCCUUUAUGGCCAAAG
......((((----------------.(---((.(((((((.......)))))))))).....(((((((....))).))))))))((((.....)))).... ( -26.10)
>DroYak_CAF1 12411 100 - 1
GUGGAAUCGCCCCAUGUUAAAGUCACCU---ACAUAUCCAUAUAGUACUUGGAUAGUAAAAAGAUCUGCUCAAUAAAAACAUGCGAGCCCUUAUUGGCCAAAG
.(((....((.(((((((.........(---((.((((((.........)))))))))....((.....))......)))))).).))((.....)))))... ( -17.10)
>consensus
GUGGAAUCGCCCCAUGUUUAAGGCACCU___ACAUAUCCAUAUAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUGCGAGGCCUUAAUGGCCAAAG
......((((........................((((((.........))))))(((((....))))).............))))((((.....)))).... (-17.64 = -18.44 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006