Locus 1452

Sequence ID 2R_DroMel_CAF1
Location 5,545,612 – 5,545,732
Length 120
Max. P 0.923845
window2481

overview

Window 1

Location 5,545,612 – 5,545,732
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.58
Mean single sequence MFE -40.18
Consensus MFE -37.32
Energy contribution -37.28
Covariance contribution -0.04
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.93
SVM decision value 1.16
SVM RNA-class probability 0.923845
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5545612 120 - 20766785
GAUUUGUCGCAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG
.....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90)
>DroSec_CAF1 16373 120 - 1
GAUUUGUCGCAGUGCAGCGCAUAUUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG
.....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90)
>DroSim_CAF1 6892 120 - 1
GAUUUGUCGCAGUGCAGCGCAUAUUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG
.....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90)
>DroEre_CAF1 15195 120 - 1
GAUUUGCCGCAGUGCAGCGCAUAGUUGAUUGCGUUGCUUGGCCCUGAUAGUCACUUCGUUUGACUUCUCGUUCUGACGUGGAACAUAGAUCUCUGUUCGGGUCUCUUCCUCGAUGCGGCG
.....((((((..((((((((........))))))))..(((((.(((((...((..((((.((.((.......)).)).))))..))....))))).)))))..........)))))). ( -45.00)
>DroYak_CAF1 6935 120 - 1
AAUUUGCCGAAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCCUGAUGGUCACUUCGUUUGACUUCUCGUUCUGACGAGGAACAUAGAUCUCUGUUCGGGUCUCUUCCUCUAUGCGGCG
.....((((((((((((((((........))))))))..((((.....)))))))))(((.(((.....)))..)))((((((...((((((......)))))).)))))).....))). ( -42.20)
>consensus
GAUUUGUCGCAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG
.....((((((..((((((((........))))))))..(((((.((((((((.......)))).))))((((.......))))..............)))))..........)))))). (-37.32 = -37.28 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:14 2006