| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,523,133 – 5,523,229 |
| Length | 96 |
| Max. P | 0.814797 |
| Location | 5,523,133 – 5,523,229 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.52 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -11.51 |
| Energy contribution | -15.02 |
| Covariance contribution | 3.51 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5523133 96 - 20766785 UGCCGGGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCACCAAGCUUGAAGAUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA .......(((((((((..(.((.(((....(((((((...)))))))..))))))..))).))))))....((((((-------(....)))))))....... ( -28.10) >DroSec_CAF1 46445 94 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGAAAACCUUUUCCCCAAGCUUGAAGCUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA (--(((.(((((((((..(.((.(((...(((((((.....))))))).))))))..))).))))))..........-------))))...((....)).... ( -29.10) >DroSim_CAF1 23713 94 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCCCCAAGCUUGAAGAUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA (--(((.(((((((((..(.((.(((...((((((((...)))))))).))))))..))).))))))..........-------))))...((....)).... ( -30.80) >DroEre_CAF1 23374 101 - 1 U--CGAGCUGCCAGUUUGACGCAUUGACCGGAAGAGGAAACCUCUUCCACAAGCUUGAAGAUGGCAGAAAAUUUGAGUUUGAAUUCGAGGCUCGAAAGAUAAA (--((((((((((.((..(.((.(((...((((((((...)))))))).))))))..))..))))).....(((((((....)))))))))))))........ ( -36.50) >DroWil_CAF1 30797 74 - 1 -----AGCUGCCACUUUGAUGCAUUGACCGGAAAGAGAUAAAUUUUGCA-GGGAAUAAAGAA--AAGAAAAUUG--------------------UAACAAAA- -----........((((..(..(((..((...((((......))))...-)).)))..)..)--))).......--------------------........- ( -5.00) >DroYak_CAF1 24451 78 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAAUCUUUUCC----------------CAGAAAAUUUGAA-------UCGAGGUUCGAAAGAUAAA (--((((((((.........)).((((..(((((((.....)))))))----------------((((...))))..-------)))))))))))........ ( -16.10) >consensus U__CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCCCCAAGCUUGAAGAUGGCAGAAAAUUUGAA_______UCGAGAUUCGAAAGAUAAA .......((((((((((((.((.(((...(((((((.....))))))).))))))))))).))))))........................((....)).... (-11.51 = -15.02 + 3.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:01 2006