Locus 1443

Sequence ID	2R_DroMel_CAF1
Location	5,521,857 – 5,521,950
Length	93
Max. P	0.995810

overview

Window 7

Location	5,521,857 – 5,521,950
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	96.56
Mean single sequence MFE	-29.31
Consensus MFE	-25.78
Energy contribution	-26.22
Covariance contribution	0.44
Combinations/Pair	1.03
Mean z-score	-2.26
Structure conservation index	0.88
SVM decision value	2.62
SVM RNA-class probability	0.995810
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5521857 93 - 20766785
GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA
((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). ( -28.52)
>DroSec_CAF1 45021 93 - 1
GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA
((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). ( -28.52)
>DroSim_CAF1 22310 93 - 1
GACACAGAAUUCCGACGAAGGAUCCCGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGGCUUUCGGGA
..........(((......)))((((((((....((..(((.(....)...)))..))(((.....(((.....))).....))))))))))) ( -25.40)
>DroEre_CAF1 22057 92 - 1
GACACAGAAUUCCAACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACCAAAACA-ACGCCAUAUGGAUUUUGUGGCAUCUGGCCUUUCGGGA
..........(((......)))(((((((...(((((((((((....))))....-..((((((.......))))))..)))))))))))))) ( -33.70)
>DroYak_CAF1 22565 92 - 1
GACACAGAAUUCCGACGAAGGAUCCUGAAAAGAGGUCGGUUGGGCAACCAAAACA-ACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA
((((((((((.(((......((((((....)).))))((((((....))).....-..)))...))))))))))))).(((((....))))). ( -30.41)
>consensus
GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA
((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). (-25.78 = -26.22 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:00 2006