Locus 1440

Sequence ID 2R_DroMel_CAF1
Location 5,519,956 – 5,520,050
Length 94
Max. P 0.983533
window2460

overview

Window 0

Location 5,519,956 – 5,520,050
Length 94
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 88.55
Mean single sequence MFE -28.60
Consensus MFE -23.34
Energy contribution -23.46
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -2.32
Structure conservation index 0.82
SVM decision value 1.95
SVM RNA-class probability 0.983533
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5519956 94 - 20766785
AGUCAGUCAAUAGUCGGCUUUUGGCCAGGCCAAUCAGUUGGGGGCACUUAAACGCCCAAUU-------GGUUAUUGAGUCGAU--AGAUAUUUCAAUUAAAUU
............((((((((.(((((((.((((....))))((((........))))..))-------)))))..))))))))--.................. ( -27.80)
>DroSec_CAF1 43190 89 - 1
---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GG-AGCACUUAAACGCCCAAUU-------GGUUAUUGAGCCGAU--AGACAUUUCAAUUAAAUU
---..(((....((((((((.(((((((.........(-((-.((........))))).))-------)))))..))))))))--.))).............. ( -25.60)
>DroSim_CAF1 20473 90 - 1
---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGGGCACUUAAACGCCCAAUU-------GGUUAUUGAGUCGAU--AGACAUUUCAAUUAAAUU
---..(((....((((((((.(((((((.(((.....)-))((((........))))..))-------)))))..))))))))--.))).............. ( -28.60)
>DroEre_CAF1 20168 99 - 1
---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGAGCACUUAGCCGCCCAAUUGGUUAUUGGCUAUUGAGUCGAGAGAGACAUUUCAAUUAAAUU
---..(((..(..(((((((.(((((((((((((...(-(((.((.....))..))))))))))..)))))))..))))))).)..))).............. ( -33.20)
>DroYak_CAF1 20674 90 - 1
---CAGUACCUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGGGCACUUAAACGCCCAAUU-------GGCUAUUGAGUCGAG--AUACAUUUCAAUUAAAUU
---..(((.(...(((((((.(((((((.(((.....)-))((((........))))..))-------)))))..))))))))--.))).............. ( -27.80)
>consensus
___CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU_GGGGGCACUUAAACGCCCAAUU_______GGUUAUUGAGUCGAU__AGACAUUUCAAUUAAAUU
.....(((....((((((((.(((((...((........))((((........))))...........)))))..))))))))...))).............. (-23.34 = -23.46 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:53 2006