Locus 1437

Sequence ID 2R_DroMel_CAF1
Location 5,510,721 – 5,510,830
Length 109
Max. P 0.672611
window2455

overview

Window 5

Location 5,510,721 – 5,510,830
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 90.09
Mean single sequence MFE -27.42
Consensus MFE -22.18
Energy contribution -22.10
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -2.24
Structure conservation index 0.81
SVM decision value 0.30
SVM RNA-class probability 0.672611
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5510721 109 - 20766785
GCAAGAGAAAGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACACAU
..........(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))...... ( -32.80)
>DroSec_CAF1 35199 106 - 1
ACAAGAGA-AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC--
........-.(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))....-- ( -32.80)
>DroSim_CAF1 12460 106 - 1
GCAAGAGA-AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC--
........-.(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))....-- ( -32.80)
>DroEre_CAF1 12281 106 - 1
GCAAGAGA-AGCUCAUUCAUUUGCGUGAGACUUAAUUAAUUCGUGUUUGAAUGGGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC--
........-.(((((((.((.((((....(((((((((((((.(((....))).))))))))..(((((......))))))))))...)))).)).)))))))....-- ( -25.00)
>DroYak_CAF1 12450 106 - 1
GCAAGAGA-AGCUCAUUCAUUUGCGUGAGGCUUAAUUAAUUCGUGUUUGAAUGGGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC--
........-.(((((((.((.((((....(((((((((((((.(((....))).))))))))..(((((......))))))))))...)))).)).)))))))....-- ( -25.30)
>DroAna_CAF1 13038 103 - 1
ACAAGAGC-A--CCAUUCAUUUAUUUGCGGCCUAAUUAAUGUGUAUUUGAAUUGGAAUUUAUAUUUGAUAUGGCAAUUAAUAGGCAUUUACAUAUUGAUGAGCAAA---
........-.--...........(((((......(((((((((((..((.(((((...((((((...))))))...)))))...))..)))))))))))..)))))--- ( -15.80)
>consensus
GCAAGAGA_AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC__
..........(((((((.((.((((....(((((.((((((((((.(..((((........))))..))))))..))))))))))...)))).)).)))))))...... (-22.18 = -22.10 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:49 2006