Locus 1418

Sequence ID 2R_DroMel_CAF1
Location 5,476,802 – 5,476,909
Length 107
Max. P 0.813629
window2428

overview

Window 8

Location 5,476,802 – 5,476,909
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 95.05
Mean single sequence MFE -23.60
Consensus MFE -19.76
Energy contribution -19.52
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.66
SVM RNA-class probability 0.813629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5476802 107 - 20766785
CGAGAAUUUGCGCACUCGCAACUCUGGCCACACCGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA
.(((((.(((((....))))).....(((...(((.......)))....))).......(((..(((((......)))))..)))................))))). ( -22.00)
>DroSec_CAF1 4382 107 - 1
CGAGAAUUUGCGCACUCGCAACUCUGGUCACACCGCAUGUCACGACAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA
.((((...(((((....))......((.....)))))......((((...((((.....(((..(((((......)))))..))).....))))....)))))))). ( -20.60)
>DroSim_CAF1 4734 107 - 1
CGAGAAUUUGCGCACUCGCAACUCUGGUCACACCGCAUGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA
.(((((..(((((....))......((.....))))).....((....))((((.....(((..(((((......)))))..))).....)))).......))))). ( -22.50)
>DroEre_CAF1 4416 107 - 1
CGAGAAUUAGCGCAUUCGCAACUCCGGCCACACUGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUGUACUAUUUCUCA
.(((((.(((..(((..((.....((((......)).))...((....)))).......(((..(((((......)))))..))).......)))..))).))))). ( -26.60)
>DroYak_CAF1 4491 107 - 1
CGAGAAUUGGCGCAUUCGCAACUCCGGCCACACUGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUGUACUAUUUCUCA
.(((((.(((..(((..((.....((((......)).))...((....)))).......(((..(((((......)))))..))).......)))..))).))))). ( -26.30)
>consensus
CGAGAAUUUGCGCACUCGCAACUCUGGCCACACCGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA
.(((((...((((....))......((.....))))......((....))((((.....(((..(((((......)))))..))).....)))).......))))). (-19.76 = -19.52 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:22 2006