Locus 1412

Sequence ID 2R_DroMel_CAF1
Location 5,457,039 – 5,457,134
Length 95
Max. P 0.997089
window2420

overview

Window 0

Location 5,457,039 – 5,457,134
Length 95
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 96.98
Mean single sequence MFE -26.50
Consensus MFE -24.66
Energy contribution -25.06
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.93
SVM decision value 2.80
SVM RNA-class probability 0.997089
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5457039 95 + 20766785
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA-
(((((((((((((.........)))....((((((((.-.((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -28.30)
>DroSec_CAF1 45391 96 + 1
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUUUUUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA-
(((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -26.90)
>DroSim_CAF1 45670 96 + 1
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUUUUUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA-
(((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -26.90)
>DroEre_CAF1 46851 96 + 1
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGCAUUGACUGUCGGGCGGAAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAAA
(((.......(((.........)))....((((((((.-.((.....))..)))))))).............)))..((((((....)))))).... ( -26.70)
>DroYak_CAF1 47010 95 + 1
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGUUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUCCGAA-
(((((((((((((.........)))....((((((((.-.((.....))..))))))))))).....)))).)))..(.((((....)))).)...- ( -23.70)
>consensus
GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU_UUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA_
(((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....)))))).... (-24.66 = -25.06 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:14 2006