| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,451,252 – 5,451,344 |
| Length | 92 |
| Max. P | 0.565135 |
| Location | 5,451,252 – 5,451,344 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 88.52 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -18.50 |
| Energy contribution | -19.17 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5451252 92 + 20766785 GAGUGUGUGGCUGUGACUGUGCCUGUGGCAUAGCGACAACAAGACAUGAAAAACAUUUUGGCCCGCGGCCAAAAUACUUAAAGCUGCAAAUG .....((..(((((..(((((((...)))))))..)).................(((((((((...)))))))))......)))..)).... ( -29.40) >DroEre_CAF1 40442 86 + 1 AAGUGUGUGGCU------GUGGCUGUGGCAUAGCGACAACAAGACAUGAAAAACAUUUUGGCCCGCGGCCAAAAUACUUAAAGCUGCAAAUG .....((..(((------((.(((((...))))).)).................(((((((((...)))))))))......)))..)).... ( -25.70) >DroYak_CAF1 40661 80 + 1 GAGUGUGUGG------------CUGUGGCAUAGCGACAACAAGACGUGAAAAACAUUUUGGCCCGCAGCCAAAAUACUUAAAGCUGCAAAUG ((((((.(((------------((((((....((.....(((((.((.....)).))))))))))))))))..))))))............. ( -22.80) >consensus GAGUGUGUGGCU______GUG_CUGUGGCAUAGCGACAACAAGACAUGAAAAACAUUUUGGCCCGCGGCCAAAAUACUUAAAGCUGCAAAUG .....((..(((...........(((.((...)).)))................((((((((.....))))))))......)))..)).... (-18.50 = -19.17 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:13 2006