Locus 14

Sequence ID 2R_DroMel_CAF1
Location 1,013,892 – 1,014,012
Length 120
Max. P 0.840199
window27

overview

Window 7

Location 1,013,892 – 1,014,012
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -33.28
Consensus MFE -22.73
Energy contribution -21.40
Covariance contribution -1.33
Combinations/Pair 1.58
Mean z-score -1.79
Structure conservation index 0.68
SVM decision value 0.75
SVM RNA-class probability 0.840199
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1013892 120 + 20766785
CCUCAACUUCAAUAAAGCGAGCUGCCAGUUUGCAGAACUGGCUAAAAUCCAAUUUACCAGUUGUUCCUUUAUCGACCUCUUUAAUAAGGGCCUUUACCGCAGGUGGUUCUAAUUUCUGAC
..................((((..((....(((..((((((.((((......))))))))))...(((((((..(.....)..)))))))........)))))..))))........... ( -26.00)
>DroVir_CAF1 5679 120 + 1
CCUCGACCUCGAUGAAACGAGCCGCUAGCUUGCAAAAUUGGCUAAAAUUUAAUUUCUCAGUGGUGCCCUUGUCGACCUCCUUGAUGAGCGCUUUCACAGCUGGUGGUUCAAGCUUCUGGC
(((((....)))......((((((((((((((..(((((((.......)))))))..))((((.((.((..((((.....))))..)).))..))))))))))))))))........)). ( -36.10)
>DroPse_CAF1 60418 120 + 1
CCUCUACUUCAAUGAAACGAGCCGCCAGCUUGCAAAAUUGGCCAAAAUCCAAUUUACCAGAUGUUCCCUUAUCUACUUCUUUAAUGAGCGCUUUAACUGCUGGCGGCUCCAGCUUCUGAC
........(((.......(((((((((((..((.(((((((.......)))))))...(((((......)))))...............)).......))))))))))).......))). ( -33.44)
>DroGri_CAF1 36703 120 + 1
CCUCGACCUCGAUGAAACGUGCAGCCAGCUUACAGAACUGAGCGAAGUUCAAUUUAGUGGAUGUGCCCUUAUCCACCUCCUUAAUCAGAGCUUUCACAGCUGGUGGUUCUAGCUUUUGGC
..(((....)))...........((((((((...(((((......)))))......(((((((......)))))))...........))))......((((((.....))))))..)))) ( -31.30)
>DroMoj_CAF1 295 120 + 1
CCUCGACCUCGAUGAAGCGAGCCGCUAGCUUGCAAAACUGGCUGAAAUUCAGUUUGCCUGUGGUGCCCUUGUCCACCUCCUUGAUCAGAGCUUUCACAGCUGGUGGUUCGAGUUUUUGGC
........((((.((..((((((((((((..(((((.((((.......))))))))).(((((.((.((.(((.........))).)).))..)))))))))))))))))..)).)))). ( -39.40)
>DroPer_CAF1 172379 120 + 1
CCUCUACUUCAAUGAAACGAGCCGCCAGCUUGCAAAAUUGGCCAAAAUCCAAUUUACCAGAUGUUCCCUUAUCUACUUCUUUAAUGAGCGCUUUAACUGCUGGCGGCUCCAGCUUCUGAC
........(((.......(((((((((((..((.(((((((.......)))))))...(((((......)))))...............)).......))))))))))).......))). ( -33.44)
>consensus
CCUCGACCUCAAUGAAACGAGCCGCCAGCUUGCAAAACUGGCCAAAAUCCAAUUUACCAGAUGUGCCCUUAUCCACCUCCUUAAUGAGCGCUUUCACAGCUGGUGGUUCCAGCUUCUGAC
..................((((((((((((((..(((((((.......)))))))..))).......(((((...........)))))..........)))))))))))........... (-22.73 = -21.40 +  -1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:26 2006