Locus 1397

Sequence ID 2R_DroMel_CAF1
Location 5,405,951 – 5,406,071
Length 120
Max. P 0.517607
window2393

overview

Window 3

Location 5,405,951 – 5,406,071
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.33
Mean single sequence MFE -28.46
Consensus MFE -19.06
Energy contribution -19.38
Covariance contribution 0.32
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.517607
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5405951 120 - 20766785
UUCGAUUCAUUGUAAAAAGAGCCUUUUCAUCAAGUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUAGGAUUGGGGCAAUUGAAUUUGUACUUGAAUCUUUGACGAACAUCAUUGC
...((((((..(((..((..(((((.((...((((((((.((((.........)))).)))))....)))..))..)))))..)).......))).)))))).................. ( -25.00)
>DroSec_CAF1 7677 120 - 1
UUCGAUUCAUUGUAAAAAUUGCCUUUUCAUCCAAUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUUGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCUUUGC
...((((((.(((((((((((((((...(((((((((((.((((.........)))).)))))......)))))).)))))))))...))))))..)))))).................. ( -35.30)
>DroSim_CAF1 6169 120 - 1
UUCGAUUCAUUGUAAAAAUUGCCUUUUCAUCCAAUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUUGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCUUUGC
...((((((.(((((((((((((((...(((((((((((.((((.........)))).)))))......)))))).)))))))))...))))))..)))))).................. ( -35.30)
>DroEre_CAF1 7625 120 - 1
UUCGAAUUAUUGUUAAAAGGGCCUUCUCAUCCAGCGGCUUAGCCUUUUCUGUUAGCUUAGCCAGCAACUUAAGAUCAGGGCAAUUAAAUUUAUACUUGAAUCUUUGACGAACAUCGUUGC
..(((....((((((((...(((((((......((((((.(((...........))).)))).))......)))...))))......(((((....))))).))))))))...))).... ( -22.20)
>DroYak_CAF1 6406 120 - 1
CUCUAUUCAUUGUAAGAAGGGCCUUCUCAUCCAGUGGCUUAGCUUUUUCUGUAAGCUUAGCCAGCAUCUUAGGAUUAAUGCAAUUAAAUUUAUAAUUGAAUUUUUUACGAACAUCGUUGC
...((((.(((.(((((.(((........)))..(((((.(((((.......))))).)))))...))))).))).))))((((((......))))))........(((.....)))... ( -24.50)
>consensus
UUCGAUUCAUUGUAAAAAGGGCCUUUUCAUCCAGUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUAGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCGUUGC
...((((((.((((((((..(((((.((......(((((.((((.........)))).))))).........))..)))))..))...))))))..)))))).................. (-19.06 = -19.38 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:48 2006