Locus 1390

Sequence ID 2R_DroMel_CAF1
Location 5,374,391 – 5,374,511
Length 120
Max. P 0.942202
window2385

overview

Window 5

Location 5,374,391 – 5,374,511
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -37.57
Consensus MFE -32.36
Energy contribution -32.03
Covariance contribution -0.33
Combinations/Pair 1.08
Mean z-score -3.11
Structure conservation index 0.86
SVM decision value 1.32
SVM RNA-class probability 0.942202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5374391 120 + 20766785
GAGCUGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAUAAGCUAUCAGGCCAAUGGUGCAAAACCGGCCAGUCAUUCCCAAUUACUGGACGUACCAUAUCUUAUCAGCUCCA
((((((((((((.((((.....(((((....)))))...(((....)))......)))).(((((((........(((((.((.....)).)))))..))))))).)))))))))))).. ( -42.40)
>DroSec_CAF1 2960 120 + 1
GAGCAGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAGAAGCUAUCAGGCCAAUGGUGCAAAACUGGCCAGUCAUUCCCAAUUACUGGACAUACAUUAUCUUAUCAGCUCCG
((((.(((((((.(((((((((...((((((.(((...((.....))..)))))))))....))))......)))))........(((.....)))..........))))))).)))).. ( -37.20)
>DroEre_CAF1 777 120 + 1
GAGCAGAUAAGAGGACCACGCCUCCGUCUGAAUGGAAAUCUUUCAGAAGCUAUCAGGCCAAUGGUGCAAAACCAGCCAGUCAUUCCUAAUUACUGGACAUACCCUAUCUUAUCAGUUCCA
((((.((((((((.((((.((((...((((((.((....)))))))).......))))...)))).).......((((((.((.....)).))))).)........))))))).)))).. ( -33.10)
>consensus
GAGCAGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAGAAGCUAUCAGGCCAAUGGUGCAAAACCGGCCAGUCAUUCCCAAUUACUGGACAUACCAUAUCUUAUCAGCUCCA
((((.((((((((.((((.((((...((((((.((....)))))))).......))))...)))).).......((((((.((.....)).))))).)........))))))).)))).. (-32.36 = -32.03 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:40 2006