Locus 1389

Sequence ID 2R_DroMel_CAF1
Location 5,364,937 – 5,365,041
Length 104
Max. P 0.620307
window2384

overview

Window 4

Location 5,364,937 – 5,365,041
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.52
Mean single sequence MFE -32.73
Consensus MFE -21.67
Energy contribution -23.62
Covariance contribution 1.95
Combinations/Pair 1.08
Mean z-score -1.30
Structure conservation index 0.66
SVM decision value 0.18
SVM RNA-class probability 0.620307
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5364937 104 + 20766785
UACGGUUGCGCACCUCCUUGGCGAAGGCCUCCGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGUAUAUACCAUAAAAUCG---UGU
(((((((((((...(((((((((((((((...)).))))))).))..))))....))((((.(((....).)))))))))))))))...............---... ( -39.40)
>DroPse_CAF1 7601 103 + 1
UGCGGGAGCGAACCUCCUUGGCAAAGGCCUCGGGACCCUGGCGUACCAGAAUAUCGCGUAGACCGCAAGGUGGCUCCGUAACUGUGCAA----GAGACUCAAAACAU
((((((.((((...((((.(((....)))..))))..((((....))))....))))((..(((....))).)))))))).........----.............. ( -32.00)
>DroSim_CAF1 7539 104 + 1
UUCGGUUGCGCACCUCCUUGGCGAAGGCCUCUGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUAUACCAUAAAAUCG---UGU
..(((((((((...(((((((((((((((...)).))))))).))..))))....))((((.(((....).))))))))))))).................---... ( -36.30)
>DroEre_CAF1 7540 104 + 1
UUCGGUUGCGCACCUCCUUGGCAAAAGCUUCUGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUGCACCAUAAAAUCA---UAU
...(((((((....(((..(((....)))...)))....)))).))).((.....((((((.(((....).))))))))...((....)))).........---... ( -28.60)
>DroYak_CAF1 7735 104 + 1
UUCGGUUGCGCACCUCCUUGGCAAAGGCCUCCGGACCUUCGCACACUAGAACCUCCCGAAGUCCCUUUGGUGGUUCCGUAACUGCAUACACCAUAAAAUCA---UAU
..((((((((........((((.((((((...)).)))).)).))...(((((..((((((...)))))).))))))))))))).................---... ( -28.10)
>DroPer_CAF1 11973 103 + 1
UGCGGGAGCGAACCUCCUUGGCAAAGGCCUCGGGACCCUGGCGUACCAGAAUAUCGCGUAGACCGCAAGGUGGCUCCGUAACUGUGCAA----GAGACUCAAAACAU
((((((.((((...((((.(((....)))..))))..((((....))))....))))((..(((....))).)))))))).........----.............. ( -32.00)
>consensus
UUCGGUUGCGCACCUCCUUGGCAAAGGCCUCCGGACCUUCGCACACCAGAACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUAAACCAUAAAAUCA___UAU
..((((((((..((.((..(((....)))...((((.(((((.............)))))))))....)).))...))))))))....................... (-21.67 = -23.62 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:39 2006