Locus 1384

Sequence ID 2R_DroMel_CAF1
Location 5,337,164 – 5,337,277
Length 113
Max. P 0.824102
window2379

overview

Window 9

Location 5,337,164 – 5,337,277
Length 113
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.59
Mean single sequence MFE -32.08
Consensus MFE -16.04
Energy contribution -17.52
Covariance contribution 1.48
Combinations/Pair 1.29
Mean z-score -2.16
Structure conservation index 0.50
SVM decision value 0.69
SVM RNA-class probability 0.824102
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5337164 113 + 20766785
A----CCAGUAACUAACCCCUUUUCUUGUCCUCUUCGAUCUCUUUGAUGACAGAUACUAUUUCAUCAUAUGUCGAGUCCCUGGAGUCCUCAUUCGACUUUAGGGACAACUGGGAGGC
.----(((((........................(((((.....((((((...........))))))...)))))((((((((((((.......)))))))))))).)))))..... ( -35.90)
>DroVir_CAF1 2810 113 + 1
G----CUGCAAGAUCACCUCGCUUCUUAUCCUCCUCAAUCUCCUUGAUGACGGACACAAUCUCAUCGUAGGUGGAGCCUCUGGAAUCAUCAUUCGACUUGAGCGACAGCUGUGAGGC
.----...........((((((..((.....(((((((((....((((((((((.....((.(((.....)))))...))))...))))))...)).))))).)).))..)))))). ( -25.60)
>DroPse_CAF1 3483 117 + 1
UCUGUCUAACAAUUUACCUCUCUUCUUGUCCUCUUCGAUCUCCUUGAUCACCGACACGAUCUCGUCGUAGGUGGAGUCCCUGGAGUCUUCGUUUGACUUCAGGGACAGCUGUGACCC
...(((..(((.(((((((.................((((.....))))..((((........)))).)))))))((((((((((((.......))))))))))))...)))))).. ( -39.40)
>DroEre_CAF1 2182 113 + 1
G----CCGCUAACUUACCCCUUUUCUUGUCCUCCUCGAUUUCCUUGAUGACAGAUACUAUUUCAUCAUAGGUGGAAUCUCUGGAGUCCUCAUUCGACUUCAGGGACAAUUGGGAGGC
.----...........(((((....((((((.....((((((((((((((...........))))))..)).)))))).((((((((.......))))))))))))))..))).)). ( -33.20)
>DroMoj_CAF1 3066 113 + 1
U----CUGACAGCGAACCCCGUUUCUUAUCCUCCUCGAUCUCCUUGAUAACUGACACAAUCUCAUCGUAUGUCGAGCCUCUGGAGUCCUCGUUCGAUUUGAGUGAUAAUUGAGAGCC
.----.(((((((((.....(((..(((((...............)))))..))).........)))).))))).(((((....(((((((.......)))).)))....))).)). ( -19.00)
>DroPer_CAF1 3609 117 + 1
UCUGUCUAACAAUUUACCUCUCUUCUUGUCCUCUUCGAUCUCCUUGAUCACCGACACUAUCUCGUCGUAGGUGGAGUCCCUGGAGUCUUCGUUUGACUUCAGGGACAGCUGUGACCC
...(((..(((.(((((((.................((((.....))))..((((........)))).)))))))((((((((((((.......))))))))))))...)))))).. ( -39.40)
>consensus
U____CUAACAACUUACCCCUCUUCUUGUCCUCCUCGAUCUCCUUGAUGACAGACACUAUCUCAUCGUAGGUGGAGUCCCUGGAGUCCUCAUUCGACUUCAGGGACAACUGUGAGCC
............................(((.(((..(((.....)))....(((........)))..))).)))((((((((((((.......))))))))))))........... (-16.04 = -17.52 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:34 2006