Locus 1383

Sequence ID 2R_DroMel_CAF1
Location 5,330,979 – 5,331,080
Length 101
Max. P 0.953492
window2378

overview

Window 8

Location 5,330,979 – 5,331,080
Length 101
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 81.29
Mean single sequence MFE -37.60
Consensus MFE -25.14
Energy contribution -27.20
Covariance contribution 2.06
Combinations/Pair 1.07
Mean z-score -2.34
Structure conservation index 0.67
SVM decision value 1.43
SVM RNA-class probability 0.953492
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5330979 101 - 20766785
UUCGAGCGGUUACGCUGCUGCUCUUUCCUUGGGGCUCUGGCACACUUAUAUGUUCCUGAUGUUCGGGGAAGUGGGUGCAAAGAACCAGAGUUCCAUCA-------GCC
...(((((((......)))))))......(((((((((((..(((((((...((((((.....)))))).))))))).......)))))))))))...-------... ( -40.50)
>DroSec_CAF1 7593 94 - 1
UUCGAGCGGUUACGCUGUUGCUGU-UCCUUGGGGCUCUGGCACACUUA--UGUUCCUGAUGUUAGGGGAAGU----GCCAAGAGCCAGAGUUCCAUCA-------GCC
....((((....))))...((((.-....((((((((((((.(((((.--...(((((....))))).))))----)......)))))))))))).))-------)). ( -37.30)
>DroSim_CAF1 7479 98 - 1
UUCGAGCGGUUACGCUGUUGCUGU-UCCUUGGGGCUCUGGCACACUUA--UGUUCCUGAUGUUAGGGGAAGUGGGUGCAAAGCGCCAGAGUUCCAUCA-------GCC
....((((....))))...((((.-....((((((((((((.((((((--(.(((((.......))))).)))))))......)))))))))))).))-------)). ( -41.70)
>DroEre_CAF1 7455 97 - 1
UUCGAGUGGUUAUGCUGCUGUUGUUUCCUUGGGGCUCUGGCACACUUA--UGUGCUUG---------GAAGUGGGUGCAAAAGCCCAGAGUUCCAUCGACCAUCAUCC
.(((((..(.....)..)...........(((((((((((....(((.--((..(((.---------.....)))..)).))).)))))))))))))))......... ( -30.90)
>consensus
UUCGAGCGGUUACGCUGCUGCUGU_UCCUUGGGGCUCUGGCACACUUA__UGUUCCUGAUGUUAGGGGAAGUGGGUGCAAAGAGCCAGAGUUCCAUCA_______GCC
....(((((.....)))))..........((((((((((((.((((((....(((((.......)))))..))))))......))))))))))))............. (-25.14 = -27.20 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:33 2006