| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,321,064 – 5,321,164 |
| Length | 100 |
| Max. P | 0.514303 |
| Location | 5,321,064 – 5,321,164 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 89.74 |
| Mean single sequence MFE | -17.10 |
| Consensus MFE | -12.03 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5321064 100 - 20766785 AUUUGCGCACUUACACU----UACAUAUGUAUGUAUGCACACACGCACCCACACUCGCACUUACACUGUGACAAACUGCGCACACCAACAUUCUCGCAUUUAUC ...((((((........----.......((.((..(((......)))..)).))(((((.......))))).....))))))...................... ( -16.70) >DroSec_CAF1 38087 104 - 1 ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCAAACUCGCACUCACACUGUGACAGACUGCAAACACCAACACUGUCGCAUUUAUC ....(((.....(((..(((.(((....))).)))))).....)))....................((((((((................))))))))...... ( -16.29) >DroSim_CAF1 44326 104 - 1 ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCACACUCGCACUCACACUGAGACAGACUGCGCACACCAACACUGUCGCAUUUAUC ....(((((.((.........(((((((....)))))))....................(((.....)))...)).)))))....................... ( -18.30) >consensus ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCACACUCGCACUCACACUGUGACAGACUGCGCACACCAACACUGUCGCAUUUAUC ....(((((.((................((.((..(((......)))..)).))(((((.......)))))..)).)))))....................... (-12.03 = -12.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006