Locus 1376

Sequence ID 2R_DroMel_CAF1
Location 5,316,822 – 5,316,914
Length 92
Max. P 0.873472
window2370

overview

Window 0

Location 5,316,822 – 5,316,914
Length 92
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -16.05
Consensus MFE -8.40
Energy contribution -8.48
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.52
SVM decision value 0.88
SVM RNA-class probability 0.873472
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5316822 92 - 20766785
--------AUCU-UGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGUCAA-GGA
--------.(((-(.((((.(((..........(((........)))(((((((.....)))))))......)))((((..........)))))))))-))) ( -16.00)
>DroVir_CAF1 36408 98 - 1
AGCCGAUUUCCC-GGCUAUAAACAUACAUCUAAACAUAAGCCGAUGUGAAGUACUAACAAUACUUCAAACAAUUUGCUUACCUACCCGAAAAAAA---AUAA
(((((......)-))))...................(((((.(((.(((((((.......)))))))....))).)))))...............---.... ( -19.50)
>DroGri_CAF1 32361 95 - 1
AGCCGACUACGUCUGCUAUAAACAUACAUCUAAACAUAAGCCAAUCUGAAGUACUAACAAUACUUCAAACAAUUUGCUUACCUACCCAAAAAGUA-------
(((.(((...))).)))...................(((((.(((.(((((((.......)))))))....))).)))))...............------- ( -13.60)
>DroEre_CAF1 34621 92 - 1
--------AUCU-UGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGCCAA-GGA
--------.(((-((.....(((..........(((........)))(((((((.....)))))))......)))((((..........))))..)))-)). ( -15.70)
>DroYak_CAF1 29672 92 - 1
--------AUCU-GGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGCCAA-GGA
--------...(-((((.............................((((((((.....)))))))).....((((......))))......))))).-... ( -17.00)
>DroAna_CAF1 29770 85 - 1
--------AUCU-GGCGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUAAAAGUACUUCAAACAAGUUGCUUACCUAAGAAAAACC--------A
--------....-((((((..............(((........)))(((((((.....)))))))......))))))...............--------. ( -14.50)
>consensus
________AUCU_GGCGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUAAGAGUACUUCAAACAAGUUGCUUACCUAACAAAAAGCGA____GGA
..............................................((((((((.....))))))))................................... ( -8.40 =  -8.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:25 2006