Locus 1373

Sequence ID 2R_DroMel_CAF1
Location 5,307,786 – 5,307,904
Length 118
Max. P 0.557019
window2367

overview

Window 7

Location 5,307,786 – 5,307,904
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 69.14
Mean single sequence MFE -20.10
Consensus MFE -9.41
Energy contribution -11.72
Covariance contribution 2.31
Combinations/Pair 1.14
Mean z-score -1.79
Structure conservation index 0.47
SVM decision value 0.05
SVM RNA-class probability 0.557019
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5307786 118 - 20766785
UCGGCCUAACAUAAGUUACAUAAUUAUCUGUAUCUAUAUUGUGAAUACUUUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGUCACGAAAUCUUUUUAAUUAGGCCGAAA
(((((((((....((.((((........)))).))...((((((.((((((.....)).(((((((((.....--.)))))))))...))))))))))...........))))))))).. ( -32.00)
>DroSec_CAF1 24732 91 - 1
---------------------------CUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGCCACGAAAUCUUUUUAAUUGGGCCCAAA
---------------------------............((((..((((((........(((((((((.....--.))))))))).)))))).))))............(((....))). ( -17.10)
>DroSim_CAF1 25038 118 - 1
UUAAACUAACAUAAGUUACAUAAUUAUCUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG--AAACUAGUUAAGCAGUGCCACGAAAUCUCUUUAAUUAGUCCCAAA
....(((((....(((((.((((......)))).)).)))(((..((((((........(((((((((.....--.))))))))).)))))).))).............)))))...... ( -18.70)
>DroEre_CAF1 25519 92 - 1
---------------------------CUUUAC-CAUACUGUGGUUACUUUAAAGAAAAUAACUAGUUUGAAAACCAACAAGUUAACCCGCACAACGGCAUCAUUUUAAUUAGGCGCAAA
---------------------------......-.....((((.(((..((((((....(((((.(((........))).)))))..(((.....))).....)))))).))).)))).. ( -12.60)
>consensus
___________________________CUUUAUCUAUACUGUGAAUACUGUGAUUAAAAUAACUAGUUGAUAG__AAACUAGUUAAGCAGUGCCACGAAAUCUUUUUAAUUAGGCCCAAA
......................................((((((.((((((........(((((((((........))))))))).))))))))))))...................... ( -9.41 = -11.72 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006