Locus 1371

Sequence ID 2R_DroMel_CAF1
Location 5,294,719 – 5,294,815
Length 96
Max. P 0.846510
window2365

overview

Window 5

Location 5,294,719 – 5,294,815
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 88.14
Mean single sequence MFE -27.78
Consensus MFE -22.14
Energy contribution -23.08
Covariance contribution 0.95
Combinations/Pair 1.21
Mean z-score -2.84
Structure conservation index 0.80
SVM decision value 0.77
SVM RNA-class probability 0.846510
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5294719 96 - 20766785
UUUUAUAGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCUCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))(((.....))).--..((((((........)))))).............))))))).......... ( -30.50)
>DroSec_CAF1 11777 96 - 1
UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCUUUCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))((....(((...--....)))((((.........))))..)).......))))))).......... ( -28.80)
>DroSim_CAF1 11765 96 - 1
UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUUCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))((....(((...--....)))((((.........))))..)).......))))))).......... ( -28.80)
>DroEre_CAF1 13158 96 - 1
UUUUACGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))((.....))...--..((((((........)))))).............))))))).......... ( -29.10)
>DroYak_CAF1 7369 96 - 1
UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU--UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))((.....))...--..((((((........)))))).............))))))).......... ( -29.10)
>DroAna_CAF1 6815 91 - 1
UUUUAUGGCUUCGAAGGCGUGGAAAACAUGCCCGCAAAUCCCUUCCUGUCG---UC-UACGUAGCCA---GUCCACUAAUUCUCCUGCAUUUAGUUUA
.....(((((.((.(((((.((((....((....))......))))...))---))-).)).)))))---....(((((...........)))))... ( -20.40)
>consensus
UUUUAUGGCUUCAAAGGCGUGGAAAACACGCCGGAAAAUCCCCU__UAUCGGAGUCCCACUCCUCCGGACAACCACUAAUCUUGGAGCAUUUAGUUUU
.......(((((((.((((((.....))))))................((((((........)))))).............))))))).......... (-22.14 = -23.08 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:20 2006