| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,267,952 – 5,268,065 |
| Length | 113 |
| Max. P | 0.918226 |
| Location | 5,267,952 – 5,268,065 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.08 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -17.99 |
| Energy contribution | -20.38 |
| Covariance contribution | 2.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5267952 113 - 20766785 CAUACAGAAACACCACCCACCCCCCCCCCCUCCCUGCUGGGCAUCGGAGGCGUGAAAAGCGCUACUCACCUGCGCACAUUCGGCAUAUCGCCGCGCUCGACAGCCAGCAGGAA ................................((((((((...(((..((((((((..((((.........))))...)))(((.....)))))))))))...)))))))).. ( -36.30) >DroSec_CAF1 135790 103 - 1 CAUACAGAACAACC----------CCCCACCCCCUGCUGGGAAUCGGAGGCGUGAAAUGCGCUACUCACCUGCGCACAUUCGGCAUAUCGCCGCGCUCGACAGCCAGCAGGAA ..............----------........((((((((...(((..((((((((.(((((.........)))))..)))(((.....)))))))))))...)))))))).. ( -37.80) >DroSim_CAF1 124397 95 - 1 CAUA--------CC----------CCCAUCCCCCUGCUGGGAAUCGGAGGCGUGAAAAGCGCUACUCACCUGCGCACAUUCGGCAUAUCGCCGCGCUCGACAGCCAGCAGGAA ....--------..----------........((((((((...(((..((((((((..((((.........))))...)))(((.....)))))))))))...)))))))).. ( -36.30) >DroWil_CAF1 191172 88 - 1 ------------CC----------CCCAAACCCAAGCCC--AAUGGCAGACCGG-GCCACUUUACUCACCUGCGUACAUUUGGUAUAUCGCCACGCUCGACAGCCAACAGGAA ------------..----------............((.--..((((....(((-((.....(((.(....).)))....((((.....)))).)))))...))))...)).. ( -16.60) >DroYak_CAF1 137867 102 - 1 CAUACUAAACG-CC----------CCCAUCCACCUGCUGGGCAUCGGAGGCGUGAAAAGCGCUACUCACCUGCGCACAUUCGGCAUAUCGCCUCGCUCCACAGCCAGCAGGAA ...........-..----------........((((((((.(...((((.((.(((..((((.........))))...)))(((.....))).))))))...))))))))).. ( -34.40) >DroAna_CAF1 152096 96 - 1 UAUA------U-CC----------UUCAUCCUUUUUAAGGUAUUUGGAGGCAGAAAAAACGGCACUCACCUGCGCACAUUCGGCAUAUCCCCUCGCUCGACAGCCAGCAGGAA ....------.-((----------((((.(((.....)))....))))))..................(((((......(((((..........)).)))......))))).. ( -21.20) >consensus CAUA________CC__________CCCAUCCCCCUGCUGGGAAUCGGAGGCGUGAAAAGCGCUACUCACCUGCGCACAUUCGGCAUAUCGCCGCGCUCGACAGCCAGCAGGAA ................................((((((((...(((..(((((.....((((.........))))......(((.....)))))))))))...)))))))).. (-17.99 = -20.38 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:10 2006