| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,262,407 – 5,262,514 |
| Length | 107 |
| Max. P | 0.582391 |
| Location | 5,262,407 – 5,262,514 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -19.20 |
| Energy contribution | -18.80 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5262407 107 + 20766785 --UUUUUUGGGGUCUGGGGUAUGAGUCUGUGGACGGUCCGG--AGAUGGAGAAGUUUUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA --((((..((((..(((((((...((((.(((.....))).--))))......(((((((((....))))))))).............))))..)))..))))..)))).. ( -33.10) >DroSec_CAF1 130301 106 + 1 --GG-CUUGGGGUUUGGGGCAUGAGUCUGCGGAUGGUCCGG--AGAUGGGGAAGUUUUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA --..-((((((((((((((((...((((.(((.....))).--))))......(((((((((....))))))))).............))))..))))))))..))))... ( -40.10) >DroSim_CAF1 117789 106 + 1 --GG-CUUGGGGUCUGGGGCAUGAGUCUGCGGACGGUCCGG--AGAUGGGGAAGUUUUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA --((-((((((.....(((((...((((.(((.....))).--))))......(((((((((....))))))))).............))))))))))))).......... ( -37.90) >DroEre_CAF1 130768 97 + 1 --GG-CU---GGCCUGGG------GUCUAUGGACGGUCCGG--AGAUGGAGGACUUCUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA --((-.(---((((.(((------((((........((((.--...)))))))))))...))))).))......((((((....))))))(((((.((....)).))))). ( -27.00) >DroYak_CAF1 132253 97 + 1 --GG-GU---GGUCUGGG------GUCUGCGGACGGUCCGG--AGAUGGAGAAGUUUUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA --((-(.---.(((....------((((.(((.....))).--))))......(((((((((....)))))))))..........)))..)))......(((.....))). ( -34.60) >DroAna_CAF1 145465 98 + 1 CAAG-UU---UUUCGGGAGGAAA---------AGGAUUCAGAAAGACUGAGAACUUUUGCGGCUAACCGCAAAACAAUUAAAUUUGAUUGCCUUUUAAAUCCUUUGAGGAA ....-((---((((((((..(((---------(((.(((((.....)))))...((((((((....))))))))((((((....))))))))))))...))))..)))))) ( -27.60) >consensus __GG_CU___GGUCUGGGG_AUG_GUCUGCGGACGGUCCGG__AGAUGGAGAAGUUUUGUGGCUAACCGCAAAACAAUUAAUUUUGAUUGCCUUCUAAGCCCUUCGAGGGA .............(((((......(((....)))..)))))........(((((((((((((....))))))))((((((....)))))).)))))...(((.....))). (-19.20 = -18.80 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:09 2006