Locus 1361

Sequence ID 2R_DroMel_CAF1
Location 5,247,508 – 5,247,616
Length 108
Max. P 0.552670
window2348

overview

Window 8

Location 5,247,508 – 5,247,616
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.26
Mean single sequence MFE -19.94
Consensus MFE -1.30
Energy contribution -3.30
Covariance contribution 2.00
Combinations/Pair 1.19
Mean z-score -1.46
Structure conservation index 0.07
SVM decision value 0.04
SVM RNA-class probability 0.552670
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5247508 108 - 20766785
GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGGUAGUCUGCAAGCUCAAACGGA-----------AUGAAAAUCAGUUUUCAAAUUAAAGU-UGCGUAUUA
(((..((((....((((((.(((((.(((((((((((......).))))))).)))....))))).)))))).-----------.((((((....)))))).......))-))..))).. ( -22.20)
>DroSec_CAF1 115540 109 - 1
GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGCUAGUCUGCAAUCUGAAACGUA-----------AUGAAAAUCAGUUUUCAAAUUAAAGUUUGUGUAUUA
.......((((((.((((((((........(((........)))....((((......)))).))))))))..-----------.((((((....)))))).........)))))).... ( -22.10)
>DroSim_CAF1 101847 109 - 1
GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGCUAGUCUGCAAGCUGAAACGUA-----------AUGAAAAUCAGUUUUCAAAUUAAAGUUUGUGUAUUA
.......((((((.(((((((((((.....(((........)))......((......)))))))))))))..-----------.((((((....)))))).........)))))).... ( -24.30)
>DroEre_CAF1 116378 106 - 1
CUAAACUACACAUUCGUUUCAGUUAAACUUCGAAAUCAAAAUCGCAUUUUGGCAGCCCGCAAGUUCAAAGCGAGCAAAA-----------AUCA-CUUUCAAAUUAAAGUUUA--UACUU
.((((((..............((((((...(((........)))...)))))).((.(((.........))).))....-----------....-............))))))--..... ( -13.90)
>DroYak_CAF1 117331 118 - 1
GUGAAGUACACAUUCGUUUCAGGUUAUUUUCAAAAUCAAAAUCACAUUUUGGUAGCCUGCAAGUUUAAAGAUAGCAAAAACAUAAUGAAAAUCAGAUUUCAAAUUAAUGUUUG--UAUUU
...(((((((((((.((((((((((((...((((((.........))))))))))))))...(((.......)))..))))....(((((......)))))....)))))..)--))))) ( -17.20)
>consensus
GUAAACAACACAACCGUUUCAGUUUAAUUCCGAAAUCAAAAUCGUAUUUUGGUAGUCUGCAAGCUCAAACGUA___________AUGAAAAUCAGUUUUCAAAUUAAAGUUUG_GUAUUA
.(((((.........(((((((.......((((((((......).)))))))....))).)))).....................((((((....)))))).......)))))....... ( -1.30 =  -3.30 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006