| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,237,571 – 5,237,669 |
| Length | 98 |
| Max. P | 0.537377 |
| Location | 5,237,571 – 5,237,669 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.01 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -21.69 |
| Energy contribution | -23.02 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5237571 98 + 20766785 UGAGUGCAUGU----GUGAGUGCAUU-UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAACACGCCCAAACACUCGCAUUAGGCA-AGAAAA ((.((((((.(----(.((((((((.-...))))))))...))...)))))).))......((((.(((......))).)))).((.((.....)).-)).... ( -30.80) >DroPse_CAF1 115857 102 + 1 CAUGUGCAUGUGCAUGUGAGUGCAUU-UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGAAAACACGCCCAAACACUUGCAUUAGAGA-AGAAAA ...((((((((((....((((((((.-...)))))))).((.......)))))))......((((.((........)).))))...)))))......-...... ( -28.00) >DroEre_CAF1 113874 98 + 1 UGAGUGCAUGU----GUGAGUACAUU-UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAACACGUCCAAACAGCCGCAUUAGGCA-AGAAAA .((((((((..----(((....))).-...))))))))((((..(((((((..........((((.(((......))).))))...)))))))))))-...... ( -27.62) >DroYak_CAF1 114860 98 + 1 UGAGUGCAUGU----AUGAGUGCAUU-UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAACACGCCCAGGCACUGGCAUUAGGCA-AGAAAU ((.((((((((----(.((((((((.-...))))))))))).....)))))).))......((((.(((......))).)))).((.((.....)).-)).... ( -29.50) >DroAna_CAF1 129880 90 + 1 CGAGUGAAUGU----GUGAGUGCAUUUUGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAAC----------ACUUGCAUUAGACGGAGAAAA ........(((----((((((((((.....)))))))).((.......))))))).(((..((((..((((..----------..))))...))))..)))... ( -23.30) >DroPer_CAF1 118473 102 + 1 CAUGUGCAUGUGCAUGUGAGUGCAUU-UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAACACGCCCAAACACUUGCAUUAGAGA-AGAAAA ...((((((((((....((((((((.-...)))))))).((.......)))))))......((((.(((......))).))))...)))))......-...... ( -31.80) >consensus CGAGUGCAUGU____GUGAGUGCAUU_UGAGUGCACUCUGCCAAUAAUGCGCACAAUUUAAGUUUCGGCAAACACGCCCAAACACUUGCAUUAGACA_AGAAAA ...((((((........((((((((.....))))))))........)))))).........((((.(((......))).))))..................... (-21.69 = -23.02 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:02 2006