| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,231,010 – 5,231,105 |
| Length | 95 |
| Max. P | 0.709984 |
| Location | 5,231,010 – 5,231,105 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.11 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -22.33 |
| Energy contribution | -23.45 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5231010 95 + 20766785 AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGGAAAAGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAAAAC ..((((((((((((..((.(((((.........)))))...(....).))..))))))..))))))....(((.(((.........))).))).. ( -27.70) >DroSec_CAF1 106878 95 + 1 CAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAGGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAGAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) ( -30.10) >DroSim_CAF1 92966 95 + 1 AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAGGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAGAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) ( -30.10) >DroYak_CAF1 108087 93 + 1 CAGGUUGUCCUUUGUAGCAUCCAGUUCUUUGUUCUGCAA-AGGAAACAGAUGCGAAGGGUACAGUAAUUCUUUG-GUGGCUUGAGAACGGGAAAC (((((..((.......(((((...(((((((.....)))-))))....)))))(((((((......))))))))-)..)))))............ ( -25.90) >consensus AAGGUUGUCCUUCGUGGCAUCCAGUUCUUUGUUCUGCAAAAGGAAACAGUUGCGAAGGGUACAAUUAUUGUUUGUGUGGGUUGAGAACGGAAAAC ..((.((((......)))).)).((((((((((((((((..(....)..))))......(((((.......))))).......)))))))))))) (-22.33 = -23.45 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:57 2006