Locus 1345

Sequence ID 2R_DroMel_CAF1
Location 5,191,763 – 5,191,855
Length 92
Max. P 0.983148
window2326

overview

Window 6

Location 5,191,763 – 5,191,855
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 75.04
Mean single sequence MFE -23.35
Consensus MFE -12.68
Energy contribution -13.77
Covariance contribution 1.09
Combinations/Pair 1.36
Mean z-score -2.40
Structure conservation index 0.54
SVM decision value 1.94
SVM RNA-class probability 0.983148
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5191763 92 + 20766785
CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUACAUAUAUGUAUAUGUAUGUACGCUACUGCAUGGCGACAUGCAAAUGUGUGUGGUUGU
............((((...((..(((((((..((((((((((....))))))))))......(((((....))))))))))))..)).)))) ( -28.30)
>DroSec_CAF1 67273 88 + 1
CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUACAUAUGUAUAU----GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU
..................(((.(((((..(((((((((....))))))----)))(((...((((((....))))))...)))))))).))) ( -24.30)
>DroSim_CAF1 53638 88 + 1
CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUGCAUAUGUAUAU----GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU
..................(((.(((((..(((((((((....))))))----)))(((...((((((....))))))...)))))))).))) ( -24.30)
>DroEre_CAF1 69006 82 + 1
CCUUUCCCUCAGACAGAUAUAUCCACAUUUCUAU------GUGUGUAU----GUACGAUACUGCGUGGCAACAUGCAAAUGUGUGUGGUUGU
......((.((.(((.(((((..(((((....))------)))..)))----)).......((((((....))))))..))).)).)).... ( -26.00)
>DroYak_CAF1 67699 74 + 1
CCUUUCCCUCAGACAGAUAUAUCCCCAUUUCUAU------------------AAACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU
......((.((.(((((.((......)).)))..------------------.........((((((....))))))...)).)).)).... ( -14.90)
>DroAna_CAF1 89882 76 + 1
CC----------GUAUAUAUAUUCGAUUUCUUGCAUAUAUACAUAUAU----AGAGGGCUGUGCGUGGUGAUAUGCAAAUGU--GCGGUUGU
((----------((((((......(....)((((((((...((..(((----((....)))))..))...))))))))))))--)))).... ( -22.30)
>consensus
CCUUUCCCUCAGACAGAUAUAUCCACAUUUAUGUAUA_AUAUGUAUAU____GUACGCUACUGCGUGGCGACAUGCAAAUGUGUGUGGUUGU
..................(((.((((.....(((((......))))).......((((...((((((....))))))...)))))))).))) (-12.68 = -13.77 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:43 2006