Locus 134

Sequence ID 2R_DroMel_CAF1
Location 1,393,520 – 1,393,632
Length 112
Max. P 0.939339
window283

overview

Window 3

Location 1,393,520 – 1,393,632
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -24.64
Consensus MFE -22.20
Energy contribution -22.80
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.90
SVM decision value 1.28
SVM RNA-class probability 0.939339
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1393520 112 + 20766785
CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCAAA
(((((.((((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ ( -24.70)
>DroSec_CAF1 20020 112 + 1
CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGCACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUCCUGUCGAGGGGCGAUCAAA
(((((..(((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))..)))))........ ( -25.80)
>DroSim_CAF1 25152 112 + 1
CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUCCUGUCGAGGGGCGAUCAAA
(((((..(((((((.((((((....)))))).......--------((((((((.((((((......)))))).))))))))(((....)))....)))))..))..)))))........ ( -25.80)
>DroEre_CAF1 19037 120 + 1
CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAUUGAACCAUUGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCGAA
(((((.((((((((.((((((....))))))...............((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ ( -24.70)
>DroYak_CAF1 20590 112 + 1
CCUCUAAACGAAUUUUCAAUUACAAAAUUGAUUACCAU--------UGAAAAUUGAGAAUUAAGUACAGUUAUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCGGUUGAUUGGCGAUCAAA
...........................(((((..((((--------((((((((.(.((((......)))).).)))))))))........((((((....))))))..)))..))))). ( -22.20)
>consensus
CCUCUAAACGAAUCUUCAAUUACAAAAUUGAUUACCAU________UGAAAAUUGAGAAUUAAGUACAGUUUUGAGUUUUCAGCAUAAUUGCAGCUGAUUUCUGUUGAGGGGCGAUCAAA
(((((.((((((((.((((((....))))))...............((((((((.((((((......)))))).))))))))(((....)))....)))))..))).)))))........ (-22.20 = -22.80 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:51 2006