Locus 1329

Sequence ID	2R_DroMel_CAF1
Location	5,139,021 – 5,139,136
Length	115
Max. P	0.988336

overview

Window 3

Location	5,139,021 – 5,139,136
Length	115
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	91.67
Mean single sequence MFE	-28.68
Consensus MFE	-25.59
Energy contribution	-25.65
Covariance contribution	0.06
Combinations/Pair	1.05
Mean z-score	-2.60
Structure conservation index	0.89
SVM decision value	2.12
SVM RNA-class probability	0.988336
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5139021 115 + 20766785
AAAACUAAACCAAAGCCGGGGGGAAAAAAUAACUGGUGGGCGAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGCAGCA
........(((((....((.((((.(((.....(((..(((....)))....)))......((.....)).))).)))).)).((......))...))))).....((....)). ( -29.60)
>DroSec_CAF1 14928 113 + 1
AAAACUAAACCAAAACCGGGGGGAAAAAAUAAAUGGUGGGCGAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGGAA--
........(((((....((.((((.(((.....(((..(((....)))....)))......((.....)).))).)))).)).((......))...)))))............-- ( -28.80)
>DroEre_CAF1 13875 111 + 1
A-AACUAAACCAAAGCCGGGGGGAAUAAAUAACUGGUGGGCAAAAGCCAAUGCCAAAGAAAGCGGAUAGCAUUUGUCCUGCCACAGGAUACUGAAAUUGGUAUAAGGCACG---A
.-............(((((.((((.(((((...((((.(((....)))...))))......((.....))))))))))).)).(((....)))............)))...---. ( -30.50)
>DroYak_CAF1 14815 111 + 1
A-AACUAAACCAAAACCGGGGGGAAUAAAUAACUGGUGGGCAAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAAUGGUAUAAGACAGA---A
.-......((((...((....))..........(((((((((((.((..(((((.......).)))).)).)))).)))))))..............))))..........---. ( -25.80)
>consensus
A_AACUAAACCAAAACCGGGGGGAAAAAAUAACUGGUGGGCAAAAGCCAAUCCCAAAGAAAGCGGAUAGCAUUUGUCCCGCCACAGGAUAAUGAAAUUGGUAUAAGGCAGG___A
........(((((....((.((((.........(((..(((....)))....)))......((.....)).....)))).)).((......))...))))).............. (-25.59 = -25.65 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:20 2006