| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,138,206 – 5,138,299 |
| Length | 93 |
| Max. P | 0.900967 |
| Location | 5,138,206 – 5,138,299 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -16.47 |
| Consensus MFE | -11.09 |
| Energy contribution | -11.28 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5138206 93 - 20766785 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCAUCACACACA---CACACAAACACACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---............(((....))).......... ( -16.00) >DroPse_CAF1 12633 92 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACACACACACCACUCCACACACCACAC---CACACACAGAUACAGAUGCAGAUAC- ......................(((((..((((((.....)))))).....................---..(.....).....)))))......- ( -10.90) >DroSec_CAF1 14156 85 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACACA---CA--------CACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---..--------..(((....))).......... ( -16.00) >DroEre_CAF1 13105 87 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACCCA---CAC------ACACCCAUGCUGGGCUACACACA ..((((((...((((.(((........))).))))...)))))).............((((---((.------.......)).))))......... ( -16.50) >DroYak_CAF1 14056 85 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACCCU---U--------ACACCCAGGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................---.--------...(((....))).......... ( -16.00) >DroMoj_CAF1 19796 77 - 1 UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAGGGCAAACACACAGUAGCAUACG---CGU------------GUGUGUGUGUGUG---- ..(((((....((((.(((........))).))))....)))))(((((((...(((((..---..)------------)))).))))))).---- ( -23.40) >consensus UAUUGUUAGUGACACUCUUUCAGCAUUAAGUGUGUACAUGACAAGCACACCCUCACACACA___CAC______ACACCCAUGCGGGACUACAAACA ..((((((...((((.(((........))).))))...)))))).................................................... (-11.09 = -11.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:18 2006