| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,130,842 – 5,130,938 |
| Length | 96 |
| Max. P | 0.797997 |
| Location | 5,130,842 – 5,130,938 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 66.92 |
| Mean single sequence MFE | -32.97 |
| Consensus MFE | -8.03 |
| Energy contribution | -9.70 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.24 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5130842 96 - 20766785 CGCCAAG-CCGGUGCAAUUUUAAUCAAAAUUCGCAUGUAUGUGCG------------CCAACUGAUGUAUGGCGGAUCGG-------UUGGCUUCAGUUGUCACAGGUUGGCGUAA ((((((.-((.((((((((.............((((....))))(------------(((((((((.(.....).)))))-------)))))...))))).))).))))))))... ( -37.70) >DroPse_CAF1 5274 80 - 1 GGUUACC-CGUGUGCAAUUUUAAUCAAAAAUCGCAUGUGUGCUCC------------GC-UCUGAUAUAUUGCGACUCGA-------CUGC---------------GUUGGCAUAA ((....)-).(((((...............((((((((((.(...------------..-...)))))).)))))..(((-------(...---------------))))))))). ( -14.20) >DroSec_CAF1 6912 96 - 1 CGCCAAG-CCGGUGCAAUUUUAAUCAAAAUUCGCAUGUGUGUACG------------CCAGCUGAUGUAUGGCGGAUCCG-------UUGGCUUCAGUCGUCACAGGUUGGCGUAA ((((((.-((.((((((((((....)))))).)))).((((.(((------------...(((((.((...(((....))-------)..)).))))))))))))))))))))... ( -33.40) >DroEre_CAF1 5891 79 - 1 CGCCAGCCCCGGUGCAAUUUUAAUCAAAAUUCGCAUGUGUGCG-------------------------AAGGCGGC------------UGCCUUUAGUUGUCGCAGGUUGGCGUAA ((((((((....(((..............((((((....))))-------------------------))((((((------------((....)))))))))))))))))))... ( -31.80) >DroYak_CAF1 6746 102 - 1 CGCCAAC-UCGGUGCAAUUUUAAUCAAAACUCGCAUAUGUGUGUG------------GCAACUGAUGUAUGGCGGCUCGG-CUGCCUUUGCCUUUAGUUGUCACAGGUUGGCGUAA (((((((-(..((((.................)))).....((((------------((((((((.(((.((((((...)-)))))..)))..))))))))))))))))))))... ( -42.03) >DroAna_CAF1 29155 115 - 1 CUCUACC-CUGGUGCAAUUUUAAUCAAAAUUCGCAUGUGUGUCUGGGUGUGUGUGGAUCACCUGAUAUAUUGCGAUUCCGGCUUGGCAAGCCUUCGCUUGUCACAGGCUGGCGUAA .......-....(((...............(((((.(((((((.(((((.........)))))))))))))))))..((((((((((((((....))))))))..)))))).))). ( -38.70) >consensus CGCCAAC_CCGGUGCAAUUUUAAUCAAAAUUCGCAUGUGUGUGCG____________CCAACUGAUGUAUGGCGGCUCGG_______UUGCCUUCAGUUGUCACAGGUUGGCGUAA (((((((....((((((((((....)))))).))))..................................(((((......................)))))....)))))))... ( -8.03 = -9.70 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:10 2006