Locus 1320

Sequence ID 2R_DroMel_CAF1
Location 5,114,460 – 5,114,580
Length 120
Max. P 0.609979
window2289

overview

Window 9

Location 5,114,460 – 5,114,580
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -44.65
Consensus MFE -27.04
Energy contribution -25.85
Covariance contribution -1.19
Combinations/Pair 1.48
Mean z-score -1.82
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.609979
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5114460 120 - 20766785
GCUCUUCGGGAUUGGUUGGCCAAGCAACCUCAUCUGAGGGCCCGCCAGGAUGACCAGUUCCUAGUUGGCUUCUUGCGAGGCUGCAAGUUUAGCCUGGAGAAGACCAAGUCCAAGCUGGAU
(.(((((((((((((((..((..((..((((....))))....))..))..)))))))))).....((((.((((((....))))))...))))....))))).)..((((.....)))) ( -46.70)
>DroVir_CAF1 21927 120 - 1
GCUCUGCGGGAUUGGCUGGCCAAGCAGCCGCAUCUAAAAUGCCGCCAGGAUGCACAGUUUUUGGUUGCCUUUCUGCGCGGCUGCAAAUUCAGCCUGGAGAAGGCCAAAUCCAAGCUGGAU
..(((((.(((((((((((....((((((((..(..(((.((.(((((((........))))))).)).)))..).))))))))....))))))(((......))))))))..)).))). ( -45.90)
>DroGri_CAF1 21934 120 - 1
GCACUGCGAGAUUGGUUGGCCAAACAGCCGCAUUUGAAAGCACGCCAAGAUGCACAAUUUCUCGUUGCCUUUCUGCGGGGUUGCAAGUUCAGUCUGGAGAAGGCCAAAUCCAAACUGGAU
(((..((((((..(((((......)))))((((((............))))))......)))))).(((((.....))))))))..(((((((.((((..........)))).))))))) ( -36.30)
>DroWil_CAF1 27101 120 - 1
GCUCUACGUGAUUGGUUGUCCAAGCAGCCACAUCUCAAGGCCCGUCAAGAUUCGCAAUUUCUUGUGGCCUUCUUGCGUGGCUGUAAAUUUAGUUUGGAGAAGACCAAAUCGAAAUUGGAU
..((((..(((((((((.(((((((((((((.....((((((...(((((.........))))).)))))).....)))))))).........)))))...)))).)))))....)))). ( -40.90)
>DroMoj_CAF1 24941 120 - 1
GCUCUGCGGGAUUGGCUAGCCAAGCAGCCGCACCUGAAGGCACGCCAGGAUGCUCAGUUCCUGGUUGCCUUUCUGCGCGGCUGCAAGUUCAGCCUAGAGAAGGCCAAGUCCAAGCUGGAC
.(((((.((..((((....))))((((((((.(..(((((((.(((((((........))))))))))))))..).))))))))........)))))))........((((.....)))) ( -57.10)
>DroAna_CAF1 28936 120 - 1
GCUCUCAGGGAUUGGCUGUCCAAGCAACCGCAUCUGAAGGCCCGUCAGGAUGACCAGUUCCUCGUGGGAUUCCUGCGCGGCUGUAAGUUCAGUCUGGAGAAGACCAAAUCCAAGCUGGAU
((..((((((((.....))))..((....))..))))..))(((((((((...(((........)))...))))).))))......((((((..((((..........))))..)))))) ( -41.00)
>consensus
GCUCUGCGGGAUUGGCUGGCCAAGCAGCCGCAUCUGAAGGCCCGCCAGGAUGCACAGUUCCUCGUUGCCUUCCUGCGCGGCUGCAAGUUCAGCCUGGAGAAGACCAAAUCCAAGCUGGAU
...........((((....))))((((((((.((....))...(.(((((....................))))))))))))))..(((((((.((((..........)))).))))))) (-27.04 = -25.85 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:07 2006