| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,100,289 – 5,100,394 |
| Length | 105 |
| Max. P | 0.548886 |
| Location | 5,100,289 – 5,100,394 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.58 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.33 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5100289 105 + 20766785 CAUUUGCUCCAC---CUGCCCAUCUAUCAGCCUGCUUGAUAGAGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU ....((..(((.---((((...((((((((.....))))))))(((((((....))))))).(((((((.(((......))).))))))).....))))..))).)). ( -30.50) >DroSec_CAF1 6842 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCUUGCUCGAUAGGGAGUAAUUGUCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU .....((.....---..))......((((..(((((((....((((((((....))))))))(((((((.(((......))).))))))).)).)))))..))))... ( -30.30) >DroSim_CAF1 6822 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGUCAU .....((.....---..))......((((..(((((((....((((((((....))))))))(((((((.(((......))).))))))).)).)))))..))))... ( -32.60) >DroEre_CAF1 6750 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGUCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCAUUUCCAUAGCUCCACCGCUCUGGCGGAACUAACUAGAAUGGGCAU ............---.(((((((.(........(((.((...((((((((....))))))))...))...)))....((((....)))).........).))))))). ( -31.20) >DroYak_CAF1 6729 105 + 1 CAUUUGCUCCAC---CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAGUCGCCGCUACUCCAUUUCCAAAGCUCCACCGCUCUGGGAGAACUAACUAGAAUGGGCAU ............---.(((((((.(.((((....)).))(((((((((((....)))))))).((((((.(((......))).))))))..)))....).))))))). ( -34.20) >DroAna_CAF1 12608 108 + 1 CAGUUGCUCGACUUGCUGCCCGUGAAACAGGUUUUGGGCUAACGUAUAGCUACCAUUGAUCCACUUCCAAAGCUCCACAGCUCGGGAGGUCCUCAGCAGAAGGGGCAU ....(((((..(((.((((..........(((....(((((.....))))))))..(((...((((((..((((....))))..))))))..))))))))))))))). ( -32.00) >consensus CAUUUGCUCCAC___CUGCCCAUCCAUCAGCCUGCUCGAUAGGGAGUAAUUGCCAUUACUCCACUUCCAAAGCUCCACCGCUCUGGGAGUACGAAGUAGAAUGGGCAU ................((.((((...................((((((((....))))))))(((((((.(((......))).)))))))..........)))).)). (-19.83 = -20.33 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:03 2006