Locus 1311

Sequence ID 2R_DroMel_CAF1
Location 5,073,154 – 5,073,256
Length 102
Max. P 0.985086
window2277

overview

Window 7

Location 5,073,154 – 5,073,256
Length 102
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -22.40
Consensus MFE -11.95
Energy contribution -12.23
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -2.67
Structure conservation index 0.53
SVM decision value 2.00
SVM RNA-class probability 0.985086
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5073154 102 - 20766785
UGUCCAUUAACCGAUUGCGUAUACUACGACCU----ACGUAAUCAAUCUGAAGCCGGGGCAAUCCUGUUUGCCUCAACUUUUAAACAUUGCUAACUUAUUGCACUC
............(((((((((..........)----)))))))).....((((..(((((((......)))))))..)))).......(((.........)))... ( -22.50)
>DroSec_CAF1 1742 98 - 1
UGUCCAUUAACCGAUUGCGUAUACC---ACCU----ACGUAAUCAAUCUGAAGCCG-GGCAAUCCUUUUUGCCUCAACUUUUAAACGUUGUUAACUUAUGGCACUU
............(((((((((....---...)----))))))))........((((-(((((......))))))((((........)))).........))).... ( -25.00)
>DroSim_CAF1 1743 98 - 1
UGUCCAUUAACCGAUUGCGUAUUCC---ACCU----ACGUAAUCAAUCUGAAGCCG-GGCAAUCCUUUUUGCCUCAACUUUUAAACGUUGUUAACUUAUGGCACUU
............(((((((((....---...)----))))))))........((((-(((((......))))))((((........)))).........))).... ( -25.00)
>DroEre_CAF1 3621 89 - 1
------GUAACCGAUUGCGUAUACG---ACCUAGAUACGUAAUCAAUCUGAAGCCG-GACAAUCCUGUUUCCCUCAAUCUUUGAACAUUGUUAACUAAC-------
------.((((.((((((((((.(.---.....))))))))))).....(((((.(-(.....)).)))))..................))))......------- ( -20.00)
>DroYak_CAF1 1718 89 - 1
------AUAACCGAUUGCGUAUACG---ACCUAGAUACGUAAUCAAUCUGAAGCCG-GGCAAUCCUGUUUCCCUCAACUUUCAAGCUUAGUUAUUUGAU-------
------(((((.((((((((((.(.---.....))))))))))).....(((((.(-(.....)).)))))..................))))).....------- ( -19.50)
>consensus
UGUCCAUUAACCGAUUGCGUAUACC___ACCU____ACGUAAUCAAUCUGAAGCCG_GGCAAUCCUGUUUGCCUCAACUUUUAAACAUUGUUAACUUAU_GCACU_
......(((((.((((((((................))))))))....(((((....(((((......))))).....)))))......)))))............ (-11.95 = -12.23 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:55 2006