| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,071,515 – 5,071,619 |
| Length | 104 |
| Max. P | 0.528491 |
| Location | 5,071,515 – 5,071,619 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -38.87 |
| Consensus MFE | -25.57 |
| Energy contribution | -26.43 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5071515 104 + 20766785 UCGUGGCUUC-ACCU----------CUUGUGGCUGGUGUUCAAUUUCGUUAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..(((....)-))..----------...(.(((((((((.(((.........((((((((...)).))))))..((.((((.(....).)))).))..))).))))))))).).. ( -36.20) >DroGri_CAF1 99 112 + 1 ---UGGCUCCAACCUUUUGGAGCAUGACGUGGCUGGUCUUCAACUUUGUGAAUCUGGCACACUGCUGCCAGGCCGAGUUCAGCUUUGGCUGGCAUUACAUUCGCAGCAGUCCGGU ---..(((((((....)))))))..((((((((..(..((((......)))).)..)).)))((((((..(((((((......)))))))(......)....))))))))).... ( -40.10) >DroSec_CAF1 106 104 + 1 UCGUGGCUAC-ACCU----------CUUGUGGCUGGCGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..(((....)-))..----------...(.((((((.(((((......)))))...(((((..(((.((((.(((((.....))))).)))))))....))))).)))))).).. ( -39.40) >DroEre_CAF1 2014 104 + 1 UCGUGGCUUC-AUCU----------CUCGUGGCUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGCUUCACUUGCGCACCAGUCCCGU ..........-....----------..((.((((((((((((......)))))...(((((.((..(((((.(((((.....))))).)))))..))..)))))))))))).)). ( -42.80) >DroYak_CAF1 85 104 + 1 UCGUGGCUUC-AGCU----------CUCAUGGUUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUUGGCUGGAUUCACUUGCGCACCAGUCCCGU ..(.(((...-.)))----------..)..((((((((((((......)))))...(((((.((...((((.(((((.....))))).))))...))..)))))))))).))... ( -33.00) >DroAna_CAF1 107 104 + 1 UCCUGGUUCC-AGUU----------GGCCUGGUUGGUGUUCAACUUUGUCAACCUGGCCCACUGCUGUCAGGCGGAGUUUGACUUUGGUUGGAGCCAUCUCCGCACCAGUCCCGU ..(((((..(-(((.----------((((.(((((..(........)..))))).)))).)))).......((((((..((.((((....)))).)).)))))))))))...... ( -41.70) >consensus UCGUGGCUUC_ACCU__________CUCGUGGCUGGUGUUCAAUUUCGUGAACCUGGCGCACUGCUGCCAGGCGGAGUUCGUCUUCGGCUGGAGUCACUUGCGCACCAGUCCCGU ..............................((((((((((((......)))))...(((((.((...((((.(((((.....))))).))))...))..)))))))))).))... (-25.57 = -26.43 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:54 2006