Locus 131

Sequence ID 2R_DroMel_CAF1
Location 1,390,492 – 1,390,612
Length 120
Max. P 0.586993
window274

overview

Window 4

Location 1,390,492 – 1,390,612
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -25.03
Consensus MFE -22.27
Energy contribution -21.50
Covariance contribution -0.77
Combinations/Pair 1.15
Mean z-score -1.78
Structure conservation index 0.89
SVM decision value 0.11
SVM RNA-class probability 0.586993
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1390492 120 - 20766785
AAUUGGUUUGUAGUGGUUUAUGCUUGAUAUACAAAUAUAUUUUGUAUCCGGCCGCUUAAACAAAAAGUAGGUAGAGUAAAUUUACCUCAAGACUUUGAUAAGCAAAUUUUGUAUUAUUCU
..((((((((.(((((((.((((..((((((....))))))..))))..))))))))))))..((((((((((((.....)))))))....)))))......)))............... ( -26.50)
>DroSec_CAF1 17523 116 - 1
AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA----UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU
...((((((((.((((((.((((..(((......)----))..))))..))))))))))))))((((((((((((.....)))))))....)))))........................ ( -24.30)
>DroSim_CAF1 22285 116 - 1
AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA----UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU
...((((((((.((((((.((((..(((......)----))..))))..))))))))))))))((((((((((((.....)))))))....)))))........................ ( -24.30)
>consensus
AAUUUGUUUGAAGCGGUUUAUGCUUGAUACACAAA____UUUUGUAUCCGACCGCUUAAACAAAAAGUAGGUAAAGUAAAUUUACUUCAAGACUUUGAUAAGCUAAUUUUGUAUUAUUCU
...(((((((.(((((((.......((((((.((.....)).)))))).))))))))))))))((((((((((((.....)))))))....)))))........................ (-22.27 = -21.50 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:41 2006