Locus 1308

Sequence ID 2R_DroMel_CAF1
Location 5,070,132 – 5,070,226
Length 94
Max. P 0.576714
window2274

overview

Window 4

Location 5,070,132 – 5,070,226
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -35.06
Consensus MFE -31.12
Energy contribution -31.72
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.89
SVM decision value 0.09
SVM RNA-class probability 0.576714
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5070132 94 + 20766785
AGGCGAUGGCC-GGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
.(((((((((.-(((((((((.((.....))....))))))))).....)))))..(((((...((((....))))....)))))))))...... ( -34.70)
>DroSec_CAF1 12910 95 + 1
AGGCGCUGGCCUGGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
.(((((((((..(((((((((.((.....))....))))))))).....)))......(((...((((....))))....)))))))))...... ( -38.50)
>DroSim_CAF1 13051 95 + 1
AGGCGCUGGCCUGGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
.(((((((((..(((((((((.((.....))....))))))))).....)))......(((...((((....))))....)))))))))...... ( -38.50)
>DroEre_CAF1 13162 94 + 1
AGGAGAUGGCC-GGGUGGCUCAGCACGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
..((((((((.-(((((((((.((((...))))..))))))))).....))))))))(((((.(((((....)))).........).)))))... ( -33.00)
>DroYak_CAF1 234 92 + 1
AGGAGAUGGCC-GGGUGGCUCAGCACGGU--GUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
..((((((((.-(((((((((.((.....--))..))))))))).....))))))))(((((.(((((....)))).........).)))))... ( -30.60)
>consensus
AGGCGAUGGCC_GGGUGGCUCAGCAGGGUGUGUCGGGGUCACCUUUGUUGCCGUUUUUUCGGGGGUGGUUAACCAUAAAACGAGGCGCCGAAAUU
.((((.((((..(((((((((.(((.....)))..))))))))).....))))...(((((...((((....))))....)))))))))...... (-31.12 = -31.72 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:52 2006