| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,069,843 – 5,069,935 |
| Length | 92 |
| Max. P | 0.681629 |
| Location | 5,069,843 – 5,069,935 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.90 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -21.12 |
| Energy contribution | -22.12 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681629 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5069843 92 - 20766785 AA-AAAACAGUUGCAGAACCCGAAUAAAAAAAACCCGUUUGCCCACCAACACAGAAGACCCGCUGGUUGGCCCACAUUCGCCUUGUGUCGCUG ..-....((((.(((.((..(((((.....(((....))).....(((((.(((........)))))))).....)))))..)).))).)))) ( -19.50) >DroSec_CAF1 12635 90 - 1 AA-AAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCGUUGUGUCGCUG ..-....((((.(((.(((.((((((..--(((....))).....(((((.(((........))))))))....)))))).))).))).)))) ( -26.00) >DroSim_CAF1 12775 91 - 1 AAAAAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCGUUGUGUCGCUG .......((((.(((.(((.((((((..--(((....))).....(((((.(((........))))))))....)))))).))).))).)))) ( -26.00) >DroEre_CAF1 12899 89 - 1 A--AAAACAGUUGCAGAACCCGAAUGAA--AAACCCGUUUUCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCCUUGCGUCGCUG .--....(((((((((....((((((.(--(((....))))....(((((.(((........))))))))....))))))..)))))..)))) ( -20.40) >consensus AA_AAAACAGUUGCAGAACCCGAAUGAA__AAACCCGUUUGCCCACCAACACAGAAGACACGCUGGUUGGCCCACAUUCGCCUUGUGUCGCUG .......((((.(((.(((.((((((....(((....))).....(((((.(((........))))))))....)))))).))).))).)))) (-21.12 = -22.12 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:51 2006