Locus 1302

Sequence ID 2R_DroMel_CAF1
Location 5,063,541 – 5,063,644
Length 103
Max. P 0.639047
window2264

overview

Window 4

Location 5,063,541 – 5,063,644
Length 103
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 84.59
Mean single sequence MFE -26.30
Consensus MFE -13.67
Energy contribution -15.39
Covariance contribution 1.72
Combinations/Pair 1.10
Mean z-score -2.72
Structure conservation index 0.52
SVM decision value 0.22
SVM RNA-class probability 0.639047
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5063541 103 + 20766785
AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG
...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50)
>DroVir_CAF1 7659 91 + 1
AAA-------UGAUUUCUUUGUCUCUGUAUUUGG---CCAGUUUGUGGUUA----AACGUAAACAUGGCCGAAAACCAAAUGAAAUCACAUGCAACACACGUUUC
...-------(((((((((((.....((.(((((---((((((((((....----..))))))).)))))))).)))))).)))))))................. ( -24.90)
>DroSec_CAF1 6360 103 + 1
AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG
...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50)
>DroSim_CAF1 6490 103 + 1
AAAAGACAGGAGAUUUUCUCGUAUUUU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG
...((((....(((((.((..((..((--((((.(((((((((.(((..........)))))))))))))))))).))..)))))))...(((...))).)))). ( -26.50)
>DroEre_CAF1 6510 102 + 1
AAAAGACAGGAGAUUUUCUGGUCU-UU--UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCAUAUGCAACGCACGUCUG
...((((....(((((.((..(..-((--((((.(((((((((.(((..........))))))))))))))))))..)..)))))))...(((...))).)))). ( -27.10)
>consensus
AAAAGACAGGAGAUUUUCUCGUAUUUU__UUCGGUUUCUGUUUUGCGGUUAAGUAAACGUAAACAGAGACGAAAAUUAAAAGAAAUCACAUGCAACGCACGUCUG
...((((....((((((............((((.((((((.((((((..........))))))))))))))))........))))))...(((...))).)))). (-13.67 = -15.39 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:42 2006