| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,389,780 – 1,389,940 |
| Length | 160 |
| Max. P | 0.997084 |
| Location | 1,389,780 – 1,389,900 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.68 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -22.64 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1389780 120 + 20766785 GGCCAAAUCAGCGGCAAAAAAGCCAAACGAUACGCUGCGCUCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGUAGCUAUUGGCAUAAACUCAGUCGAGAAAAAAAGUCAACAAGC .(((((...((((((......))).........((((.(((....((((...(((......)))...))))))))))).))).))))).....(((....)))................. ( -24.20) >DroSec_CAF1 16784 118 + 1 GGCCAAAUCAGCGGCAAAAAAGCCAAACGAUACGCUGCGCUCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGCAGCUAUUGGCAUAAACUCAGUCGAGAAAA-A-GUCAACAAGC .(((((...((((((......))).........((((.(((....((((...(((......)))...))))))))))).))).))))).....(((....)))....-.-.......... ( -26.60) >DroSim_CAF1 21538 119 + 1 GGCCAAAUCAGCGGCAAAAAAGCCAAACGAUACGCUGCGCUCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGCAGCUAUUGGCAUAAACUCAGUCCAGAAAA-AGGUCAACAAGC ((((......(((((......)))...(((((.((((((((....((((...(((......)))...)))))))..))))))))))))......((......))...-.))))....... ( -26.40) >DroEre_CAF1 14941 117 + 1 -GCCAAAUCAGCGGCAAAAAAGCCAAACGAUACGCUGCGCUCAUAAAAACACUAUAAA-AAGUGACAUUUUGGCCAGAAGCUAUUGGCAUAAACUCAGCCGAGAAAA-AAGUCAACAAGC -(((((...((((((......)))..........(((.((.((......((((.....-.))))......)))))))..))).))))).....(((....)))....-............ ( -25.70) >consensus GGCCAAAUCAGCGGCAAAAAAGCCAAACGAUACGCUGCGCUCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGCAGCUAUUGGCAUAAACUCAGUCGAGAAAA_AAGUCAACAAGC .(((((...((((((......))).........((((.(((....((((...(((......)))...))))))))))).))).))))).....(((....)))................. (-22.64 = -22.82 + 0.19)
| Location | 1,389,820 – 1,389,940 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -26.74 |
| Energy contribution | -26.98 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.80 |
| SVM RNA-class probability | 0.997084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1389820 120 + 20766785 UCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGUAGCUAUUGGCAUAAACUCAGUCGAGAAAAAAAGUCAACAAGCGCCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .........((((.........((((.((((.((((((....)))))).....(((....)))..)))).)))).....(((((.((((....)))).)))))))))............. ( -33.50) >DroSec_CAF1 16824 118 + 1 UCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGCAGCUAUUGGCAUAAACUCAGUCGAGAAAA-A-GUCAACAAGCGUCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .........((((.........((((.((((.(((((......))))).....(((....)))))))-.-)))).....(((((.((((....)))).)))))))))............. ( -29.30) >DroSim_CAF1 21578 119 + 1 UCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGCAGCUAUUGGCAUAAACUCAGUCCAGAAAA-AGGUCAACAAGCGUCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .....................((((.(((((((((....(((.(((((......((......))...-..)))))..)))((((.((((....)))).)))).)))))))))....)))) ( -27.00) >DroEre_CAF1 14980 118 + 1 UCAUAAAAACACUAUAAA-AAGUGACAUUUUGGCCAGAAGCUAUUGGCAUAAACUCAGCCGAGAAAA-AAGUCAACAAGCGUCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .........((((.....-.))))..(((((((((....(((.(((((.....(((....)))....-..)))))..)))((((.((((....)))).)))).)))))))))........ ( -29.30) >DroYak_CAF1 12727 119 + 1 UCAUAAAAAGGCUAUAAAAAAGUGACAUUUUGGCCAGAAGCUAUUGGCAUAAACACAGUCGAGAAAA-AAGUCAACAAGCGUCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .....................((((.(((((((((....(((.(((((...................-..)))))..)))((((.((((....)))).)))).)))))))))....)))) ( -25.40) >consensus UCAUAAAAAGACCAUAAAAAAGUGACAUUUUGGCCAGAAGCUAUUGGCAUAAACUCAGUCGAGAAAA_AAGUCAACAAGCGUCUGCGAUAAGCGUUGGGGGCGGGUCAAAAUCAAAUCAC .....................((((.(((((((((....(((.(((((.....(((....))).......)))))..)))((((.((((....)))).)))).)))))))))....)))) (-26.74 = -26.98 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:31 2006