Locus 1289

Sequence ID 2R_DroMel_CAF1
Location 5,029,333 – 5,029,423
Length 90
Max. P 0.539274
window2229

overview

Window 9

Location 5,029,333 – 5,029,423
Length 90
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 84.59
Mean single sequence MFE -25.63
Consensus MFE -16.68
Energy contribution -17.83
Covariance contribution 1.16
Combinations/Pair 1.12
Mean z-score -2.71
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.539274
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5029333 90 + 20766785
ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC
.....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90)
>DroSec_CAF1 9387 90 + 1
ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC
.....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90)
>DroSim_CAF1 9419 90 + 1
ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC
.....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90)
>DroEre_CAF1 9407 90 + 1
ACUCAGGCGAGAGACC-------------CACAAAUCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC
.....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -25.90)
>DroYak_CAF1 9552 90 + 1
ACUCAGGCGAGAGACC-------------CAGAAAUCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGGUUUCACCGGAAACAGUCAC
.(((....))).(((.-------------..((((((..((((((((((((.(((.....)))))))))))).....)))..))))))...(....).))).. ( -26.70)
>DroPer_CAF1 17767 92 + 1
ACCCAG-CGAGACUCCCACGUAGUCGCACCACAAACCUAUGGACAAUGCCUAUGUAUACUAUAAGGUACUGUAG----------UUCAUCAGCGAACACUCGC
.....(-((((((......))..((((.(((........)))(((.(((((.((((...))))))))).)))..----------.......))))...))))) ( -20.50)
>consensus
ACCCAGGCGAGAGACC_____________CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC
.....((((....................((........)).(((((((((.(((.....))))))))))))..)))).((((.(((.....))).))))... (-16.68 = -17.83 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:01 2006