Locus 1279

Sequence ID 2R_DroMel_CAF1
Location 5,017,676 – 5,017,766
Length 90
Max. P 0.671498
window2215

overview

Window 5

Location 5,017,676 – 5,017,766
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -22.65
Consensus MFE -22.01
Energy contribution -22.08
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.63
Structure conservation index 0.97
SVM decision value 0.29
SVM RNA-class probability 0.671498
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5017676 90 - 20766785
CAUAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA
...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80)
>DroSec_CAF1 71901 90 - 1
CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA
...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80)
>DroSim_CAF1 75185 90 - 1
CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA
...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80)
>DroYak_CAF1 77339 90 - 1
CAGAUAUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUGCGAAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAAAACAGA
...............((((((....((((((((....((((..((.(..(....)..).))...))))..))))).)))..))))))... ( -19.20)
>consensus
CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA
...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... (-22.01 = -22.08 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:48 2006