| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,983,322 – 4,983,421 |
| Length | 99 |
| Max. P | 0.782463 |
| Location | 4,983,322 – 4,983,421 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 84.31 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -21.45 |
| Energy contribution | -24.03 |
| Covariance contribution | 2.59 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4983322 99 + 20766785 GGGCGACAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGCCAGCUCAAGCCCAUGCGUAAGUAUAGAUUUCAAGAAUAUGC-UAUUCAAUUCAAAACGAA------ ((((........((......))......(((((((....)))))))..))))((((....)))).........(((((...-))))).............------ ( -28.70) >DroSec_CAF1 47981 98 + 1 GGGCGACAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGCCAGCUCAAGCCCAUGCGUAAGUACAGAUUUUAAGAAUAUGG-UAUUCAAUUAAAAA-CAA------ ((((........((......))......(((((((....)))))))..)))).(((....)))..(.(((((((((((...-)))))..)))))).-)..------ ( -27.90) >DroSim_CAF1 50584 99 + 1 GGGCGACAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGCCAGCUCAAGCCCAUGCGUAAGUAUAGAUUUCAAGAAUGUGG-UAUUCUAUUCAAAACCAA------ ((.(........)((((((((((.((..(((((((....)))))))...)).((((....))))..............)))-...)))))))....))..------ ( -29.40) >DroEre_CAF1 43089 95 + 1 GGGCGAUAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGCCAGCUCAAGCCCAUGCGUAAGUAUAGAUUUGAAGAAUAUAG-UAUUCAAUUUAUA----------A ((((........((......))......(((((((....)))))))..))))((((....)))).((.(((((........-..))))).))...----------. ( -28.80) >DroYak_CAF1 52689 101 + 1 GGGCGAUAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGUCAGCUCAAGCCCAUGCGUAAGUAUAGAUUUGAAGAGUAUAG-UAUUCGAUUCAUAAGCAU----AA ((((........((......))......(((((((....)))))))..))))((((....)))).((.(((((........-..))))).))........----.. ( -27.40) >DroAna_CAF1 46806 106 + 1 GGGCGACAAGAAGGAGUGGACCAAGGAGGAGCUAGUCAGUCAACUGAAGCCCAUGCGUAAGUUUUGAGUUUAAGGAUAUAGGGACUCCAUUAUGAGAGAUACCUGG ((((..((.((..((.(((.((.....))..))).))..))...))..))))..((....))................((((..((((.....).)))...)))). ( -23.60) >consensus GGGCGACAAAAAGGAGUGGACCAAGGAGGAGCUGGUCAGCCAGCUCAAGCCCAUGCGUAAGUAUAGAUUUCAAGAAUAUAG_UAUUCAAUUCAAAA_CAA______ ((((........((......))......(((((((....)))))))..))))((((....)))).........(((((....)))))................... (-21.45 = -24.03 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:41 2006