Locus 1273

Sequence ID 2R_DroMel_CAF1
Location 4,974,272 – 4,974,381
Length 109
Max. P 0.746006
window2207

overview

Window 7

Location 4,974,272 – 4,974,381
Length 109
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 76.70
Mean single sequence MFE -25.26
Consensus MFE -14.62
Energy contribution -15.37
Covariance contribution 0.75
Combinations/Pair 1.19
Mean z-score -1.93
Structure conservation index 0.58
SVM decision value 0.46
SVM RNA-class probability 0.746006
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4974272 109 + 20766785
UCGCGGUUUCCAACGAGGCGUUUAAGCCAACAAGGGAAAAACAACUCCUUGAAAACAAACUGGCUUAAGGCAUGAGGCAACUACGAAGAUAUAGUUCAA-GCUGAAUAUA--
(((..(((.((......((.(((((((((.((((((.........)))))).........)))))))))))....)).)))..))).......((((..-...))))...-- ( -25.10)
>DroSec_CAF1 38998 94 + 1
UCGC---------------GUUUAAGUCAACAAGGGUAAAACUACUCCUUGUAAAUAAACUGGCUUAAAGCAGGAGGCAGCUACGAAGUUAUAGUUCAA-ACUGAAAAUA--
..((---------------.((((((((((((((((((....))).))))))........)))))))))))((...(.(((((........))))))..-.)).......-- ( -21.10)
>DroSim_CAF1 41605 94 + 1
UCGC---------------GUUUAAGCCAACAAGGGGAACACUACUCCUUGUAAAUAAACUGGCUUAAAGCAGGAGGCAACUACGAAGUUAUAGUUCAA-ACUGAACAUA--
((((---------------.(((((((((((((((((.......))))))))........))))))))))).(.((....)).))).......((((..-...))))...-- ( -28.20)
>DroYak_CAF1 43704 112 + 1
UCGCGGUUUCCACCGAGGCGUUUACACCAAUAAGGGGAAAACUACUGCUUGAAAAAAAACUGGCUUAAGGCAGAAGGCAACUGCGAUGUUGUAGUUGAAAACUAAAGGCACG
(((((((((((.((..((.(....).)).....)))))...((.((((((.................)))))).))..))))))))(((..((((.....))))...))).. ( -26.63)
>consensus
UCGC_______________GUUUAAGCCAACAAGGGGAAAACUACUCCUUGAAAAUAAACUGGCUUAAAGCAGGAGGCAACUACGAAGUUAUAGUUCAA_ACUGAAAAUA__
(((.................(((((((((((((((((.......))))))))........))))))))).....((....)).))).....((((.....))))........ (-14.62 = -15.37 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006