| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,947,367 – 4,947,458 |
| Length | 91 |
| Max. P | 0.592836 |
| Location | 4,947,367 – 4,947,458 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 72.00 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4947367 91 + 20766785 UAUAUGCUUGGAUAUGC-AUC--U----UUAAACAUACACAAUGGCGGCGUUAUGUUCAGCUCGCUGGAGAAGCCACUGCUGUUAAUGCUGUUGUUAU------ ...((((........))-)).--.----............((..(((((((((....((((..(((.....)))....)))).)))))))))..))..------ ( -25.10) >DroVir_CAF1 13652 89 + 1 GAU-----UGAAUA--U-AAUAGACAA-AGAGACGUACAUAGGGGCGGCGUUAUGUUUAGCUCGCUGGAGAAGCCGCUGCUGUUGAUGCUCAAGUUGU------ ...-----......--.-.....((((-.(((.(((..((((.((((((....(.(((((....))))).).)))))).))))..))))))...))))------ ( -26.30) >DroPse_CAF1 12955 88 + 1 CUUUAGCUU----AUGGAAUA--U----UUCAACCUACAUAGAGGCGGCGUUAUGUUCAGCUCGCUGGAGAAGCCACUGCUGUUUAUGCUGAUGCUGU------ (((((....----.((((...--.----)))).......)))))(((((((((.((.((((..(((.....)))....)))).....)))))))))))------ ( -20.70) >DroGri_CAF1 11841 96 + 1 AGU-----UAACAA--U-AUUAUACAAUAUAAACCUACAUAAUGGUGGCGUUAUGUUUAGCUCGCUGGAGAAGCCGCUGCUAUUGAUGCUCAUGUUGUUAUUAU ...-----((((((--(-((............(((........)))(((((((....((((..(((.....))).))))....))))))).))))))))).... ( -22.20) >DroEre_CAF1 8368 91 + 1 UUUUAGCUUAGAUGUGC-AUU--A----AUAAACAUACACAAUGGCGGCGUUAUGUUCAGCUCGCUGGAAAAGCCACUGCUGUUAAUGCUGUUGUUAU------ .....((........))-...--.----............((..(((((((((....((((..(((.....)))....)))).)))))))))..))..------ ( -24.00) >DroPer_CAF1 13663 88 + 1 CUUUAGCUU----AUGGAAUA--U----UUCAACCUACAUAGAGGCGGCGUUAUGUUCAGCUCGCUGGAGAAGCCACUGCUGUUUAUGCUGAUGCUGU------ (((((....----.((((...--.----)))).......)))))(((((((((.((.((((..(((.....)))....)))).....)))))))))))------ ( -20.70) >consensus CUUUAGCUU__AUAUGC_AUU__A____AUAAACCUACAUAAUGGCGGCGUUAUGUUCAGCUCGCUGGAGAAGCCACUGCUGUUAAUGCUGAUGUUGU______ ......................................((((...((((((((....((((..(((.....)))....)))).))))))))...))))...... (-14.76 = -14.82 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:38 2006