| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,936,693 – 4,936,789 |
| Length | 96 |
| Max. P | 0.591638 |
| Location | 4,936,693 – 4,936,789 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 62.86 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -8.35 |
| Energy contribution | -9.27 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4936693 96 - 20766785 AUUUCUUUA----------------AAUUGAUAUGUGACCUAUUUAAAGCAAUCGUAGUAGGUGUGCGAUCACUUGCCAUUAUCUUGGUCAUUCCCAGGUUCCUGGUGAAAG .........----------------..........(((((....(((.((....)).(((((((......)))))))..)))....)))))(((((((....)))).))).. ( -21.60) >DroSec_CAF1 1205 81 - 1 AUUUCUUUA----------------AAUU---------------GAAAGCAAUCGUAGUAGGUAAGCGAUAACUUGCCAUUAUCUUGGUCAUUCCCAGGUUCCUGGUGAAUG .((((....----------------....---------------)))).(((..(((((.((((((......))))))))))).)))..(((((((((....)))).))))) ( -21.70) >DroSim_CAF1 284 81 - 1 NNNNNNNNA----------------AAUU---------------GAGAGCAAUCGUAGUAGGUAAGCGAUAACUUGCCAUUAUCUUGUUCAUUCCCAGGUUCCUGGUGAAUG .........----------------....---------------..((((((..(((((.((((((......))))))))))).))))))((((((((....)))).)))). ( -24.70) >DroEre_CAF1 284 96 - 1 ---------------CUAAUCAACAAAUGAAAAUGUAAACUAU-UCAAUCAAUCCUAGUAGGUAAGCGAUCACUUGCCAUAAUCUUCGUCAUGCCCAGGUUCCUGGUGAAUG ---------------.........................(((-(((.............((((((......))))))................((((....)))))))))) ( -16.10) >DroYak_CAF1 284 112 - 1 AUUUCGGUAAACAUGCUAAUUCACAAAUGAAAAUGUGAACUAUUUCAAUCAAUCCUAGUAGGUAUGCGAUCACUUGCCAUUAUCUUGGUCAUGCCCAGGUUCCUGGUGAAUG .....(((...(((((...((((((........))))))(((((............))))))))))..)))..(..(((....(((((......)))))....)))..)... ( -23.40) >DroAna_CAF1 958 74 - 1 --------------------------------------UCUAUUCCCCACUAUCCCAGCAGUCCAAAGUCCACUUACCAUUAUCUUCUUCAUGCCUAGAUUACGGGUGAAUG --------------------------------------..((((((((...(((...(((.....(((...............))).....)))...)))...))).))))) ( -10.86) >consensus ________A________________AAUU__________CUAU_UAAAGCAAUCCUAGUAGGUAAGCGAUCACUUGCCAUUAUCUUGGUCAUGCCCAGGUUCCUGGUGAAUG ............................................................((((((......))))))..........(((...((((....)))))))... ( -8.35 = -9.27 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:36 2006