Locus 1264

Sequence ID 2R_DroMel_CAF1
Location 4,929,319 – 4,929,416
Length 97
Max. P 0.786360
window2191

overview

Window 1

Location 4,929,319 – 4,929,416
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.15
Mean single sequence MFE -30.53
Consensus MFE -23.35
Energy contribution -22.77
Covariance contribution -0.58
Combinations/Pair 1.38
Mean z-score -1.50
Structure conservation index 0.76
SVM decision value 0.57
SVM RNA-class probability 0.786360
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4929319 97 + 20766785
ACAAGCACCAUUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUGACCUACGCAGUCGUCGUGGUGUGUUCUGCAAUUUGUAUAUCCUGAAAAGG
....(((((((.(((((((((((............)))))))))))(((.......)))...)))))))..................(((....))) ( -31.30)
>DroSec_CAF1 18092 97 + 1
ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGGCUGACCUACGCAGUCGUUGUGGUUCGUUCUGCAAUUCGUAUAUUCUAAAAAGG
....(.(((((.(((((((((((............)))))))))))(((.......)))...))))).)............................ ( -25.70)
>DroSim_CAF1 18233 97 + 1
ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGGCUGACCUACGCAGUCGUCGUGGUGCGUUCUGAAAUUCGUAUAUCCUGAAAAGG
....(((((((.(((((((((((............)))))))))))(((.......)))...)))))))..................(((....))) ( -35.40)
>DroEre_CAF1 16130 91 + 1
ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUCACCUACGCAGUCAUUGUGGUGUGUUCUGCAAUUCCUAUUUGCUU------
....(((((((.(((((((((((............)))))))))))...((....)).....))))))).....((((.......))))..------ ( -29.10)
>DroYak_CAF1 18644 96 + 1
ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUCACCUACGCAGUUGUUGUGGUGUGUUCUGCAUUCCCUAUGUGCUUAAAGA-
..((((((....(((((((((((............)))))))))))(((((((((....).))))).)))...............)))))).....- ( -30.60)
>DroPer_CAF1 15749 92 + 1
ACAAGCAUCAUUGCUCCGAUGUUCUGGCAGGAGCCGGCAUUGGUAUUACAUAUGCCAUUAUUGUGGUGAGUGUUACCA---AGAUAUGCCAAUGA--
.......((((((((((..(((....)))))))).((((((((((..((((.((((((....)))))).)))))))))---....))))))))))-- ( -31.10)
>consensus
ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUGACCUACGCAGUCGUUGUGGUGUGUUCUGCAAUUCGUAUAUGCUAAAAAG_
....(((((((.(((((((((((............))))))))))).....(((....))).)))))))............................ (-23.35 = -22.77 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:25 2006