| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,926,439 – 4,926,545 |
| Length | 106 |
| Max. P | 0.866941 |
| Location | 4,926,439 – 4,926,545 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.95 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.83 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4926439 106 - 20766785 -GGUGU---ACGGGAACGAAAAAUGCUAUUGUGCAUGCGAUAAGCGAUGAGCGAUCGUGAAUAGCGAUCGACUAAGUCCGAGUC-------GAAAUGCUGCUCAAAUACUGAAUACU -(((((---.(((..........(((((((((....))))).)))).(((((((((((.....))))))((((.......))))-------........)))))....))).))))) ( -31.30) >DroSec_CAF1 15196 105 - 1 -GGUGA---ACGGUAAGGAAAAACGCUAUUGUGCAAGCGAUAAGCGAUGAGCGAUCGUG-AUAGCGAUCGACUAAGUCCGAGUC-------GAAAUGCUGCUCAAAUACUGAAUACU -((((.---.(((((........(((((((((....))))).)))).(((((((((((.-...))))))((((.......))))-------........)))))..)))))..)))) ( -33.30) >DroSim_CAF1 15360 104 - 1 -GGUGA---ACGGUAAGGAA-AACGCUAUUGUGCAAGCGAUAAGCGAUGAGCGAUCGUG-AUAGCGAUCGACUAAGUCCGAGUC-------GAAAUGCUGCUCAAAUACUGAAUACU -((((.---.(((((.....-..(((((((((....))))).)))).(((((((((((.-...))))))((((.......))))-------........)))))..)))))..)))) ( -33.30) >DroEre_CAF1 13185 104 - 1 AGGUGA---ACGCGAACGC--AACGCUAUUGUGCAAGCGAUAAGCGAUGAGCGAUCAUG-AUAGCGAUCGACUAAGUCCGAGUC-------GAAAUGCUGCUCAAUUACUAAAUACU .(((((---.(((.....(--(.(((((((((....))))).)))).)).)))....((-((((((.((((((.......))))-------))..))))).))).)))))....... ( -29.50) >DroYak_CAF1 15681 102 - 1 -GGUGA---ACGCGAACGA--AACGCUAUUGUGCAA-CGAUAAGCGAUGAGCGAUCGUG-AUAGCGAUCGACUAAGUCCGAGUC-------GAAAUGCUGCUCAAAUACUAAAUACU -((((.---..........--..((((((((.....-)))).)))).(((((((((((.-...))))))((((.......))))-------........)))))..))))....... ( -27.70) >DroAna_CAF1 12253 102 - 1 -GUUGUUGUUGGGAGAAGGUAAACGCAAUUGCGCAAGCGAUA----AUGAGCGAUCGCG-AU--CGGUCUCCGAAGUCUCAGAAGAGUUCAGAAUUUUCGGUCAA-------AUAAU -...((((((.(((((.(((...(((.(((((....))))).----..((....)))))-))--)..)))))(((.(((....))).)))..............)-------))))) ( -26.00) >consensus _GGUGA___ACGGGAACGAA_AACGCUAUUGUGCAAGCGAUAAGCGAUGAGCGAUCGUG_AUAGCGAUCGACUAAGUCCGAGUC_______GAAAUGCUGCUCAAAUACUGAAUACU .((((..................(((((((((....))))).)))).(((((((((((.....))))))((((.......))))...............))))).........)))) (-20.08 = -20.83 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:23 2006